Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MADE_01980 |
Symbol | |
ID | 6775458 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Alteromonas macleodii 'Deep ecotype' |
Kingdom | Bacteria |
Replicon accession | NC_011138 |
Strand | - |
Start bp | 2137643 |
End bp | 2139307 |
Gene Length | 1665 bp |
Protein Length | 554 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 642755416 |
Product | putative membrane-bound lytic murein transglycosylase |
Protein accession | YP_002126278 |
Protein GI | 196156789 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1388] FOG: LysM repeat |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.531039 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAGTTGA AGTTTTTCCC ACTATCGCCG CTGATATTAG CGATAGGTTT AACGGGTTGT CAGTTAACCG ATAATAATAA CGACAGTGCG CAATTAGAAA GTAACGAGAA CGCTTCATTA GAAGCGTGTA GTGAAATTCA CAATACCGAA GAAGCCATTT CCGATTGCGA AATTGCAAGA GACGGCGTTA TTGATGTTGT TCATCCTAAT GACGACGTCT TAGAAGAAGG TGCAGAACTT ACCGATACGC CAGATTTACA CACGCAGGCC GTTGTCACTA ATGTGTGGGA ACGGGCCAGC ACCAATTTTG CGCTGCCTAT TCCAGATGAA AAGCGGATAA GCTCGCAAAG AAAATGGTAT CTAAAGCACC CCGAATACAT GGCCCGCGTA GTCAAGCGTG CCAAACCTTT TTTGTATTAC ATTGTTGAAG AAATTGAAAA GCGCGACATG CCTATGGAGC TTGTGCTTTT ACCCATCGTA GAAAGTGCGT TCGACCCTTT TGCCTACTCT CACGGACGTG CAGCGGGAAT GTGGCAGTTT ATACCTGGCA CAGGCAAACG CTTCGGTATG CCTCAGAACT GGTGGTACGA TGGCCGCCGC GACGTGGTTG CTTCTACAAA AGGGGCGTTA GACTACCTCA CATATCTAAA CGATATGTTC GACGGAGACT GGCTTCATGC ACTTGCCGCG TACAATAGCG GTGAAGGCAG AGTGCAAAGA GCGATTAAAG CGAATATACG GGCGGGTAAA CCTACTGACT TTTGGAATTT GAACTTACCG AAAGAAACCC GTGCATACGT GCCAAAGCTG TTAGCCCTAG CCGACATTCT TAAAAACAAA GACGAATATG CCTATTCATG GCCGGAAGTG GAAAACGTAG CGGTTATTGA AGTGGTAGAT ATTGGTTCTC AGGTAGACCT TGCCTTTGCC GCAGACCTAG CCGGCATGTC GTTAAAAGAG CTACATGCAC TCAACCCTGG CTTTAACCGT TGGGCCACAT CGCCAGATGG ACCACATAGG CTTGTCTTAC CCTTAGTAAA AGCCGCCGCG TTTTCTCAAG CTCTGGCCAA AATCGATCAA AAAGAGCGCC TAAACTGGGT TCGCCACACG GTGAAGTCAG GCGACAGCTT GAGTAAAATT GCTAAGCAAT ACCACACTAC GGTGAAAGTG CTAAAAAGAA TTAACGAGCT GGATAGCTCT ATGATTCGAG TGGGCCAAGC GATTATGGTA CCCGTTGCAC TGCAAGAACT CGATAGCTAC ACGTTATCAC AGGAACAGCG CCTTGCCAGT TTGCAAAGTG GCAGTGGGTC TAAACAGAAA GTACGCCATA CGGTTAAATC AGGTGATACG CTTTGGGATA TCGCCCGTAA GTACAAAATA AGCACCAAAC AACTTGCTAA GTGGAACGGT ATGGCGCCTG GCGATATGCT TCATCCAGGT AAAACATTAG TAATATGGCA ACAAGGAACG CCTCAAAACG GCGTTACCAA GAAGCTAACT TACACGGTAA GAAATGGTGA CTCCTTGTCT CGTATTGCCA GCAAGTTCAA TGTTAAAGTA AGCGACATAG GCAAGTGGAA CTCACTAAAT ACCAAACGTT ATTTACAGCC AGGCCAGAAG CTTAAGCTTT ACGTAGATGT AACTAGGTCT AGCGCCTCAG GCTAA
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Protein sequence | MQLKFFPLSP LILAIGLTGC QLTDNNNDSA QLESNENASL EACSEIHNTE EAISDCEIAR DGVIDVVHPN DDVLEEGAEL TDTPDLHTQA VVTNVWERAS TNFALPIPDE KRISSQRKWY LKHPEYMARV VKRAKPFLYY IVEEIEKRDM PMELVLLPIV ESAFDPFAYS HGRAAGMWQF IPGTGKRFGM PQNWWYDGRR DVVASTKGAL DYLTYLNDMF DGDWLHALAA YNSGEGRVQR AIKANIRAGK PTDFWNLNLP KETRAYVPKL LALADILKNK DEYAYSWPEV ENVAVIEVVD IGSQVDLAFA ADLAGMSLKE LHALNPGFNR WATSPDGPHR LVLPLVKAAA FSQALAKIDQ KERLNWVRHT VKSGDSLSKI AKQYHTTVKV LKRINELDSS MIRVGQAIMV PVALQELDSY TLSQEQRLAS LQSGSGSKQK VRHTVKSGDT LWDIARKYKI STKQLAKWNG MAPGDMLHPG KTLVIWQQGT PQNGVTKKLT YTVRNGDSLS RIASKFNVKV SDIGKWNSLN TKRYLQPGQK LKLYVDVTRS SASG
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