| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_01742 |
|---|
| Symbol | |
|---|
| ID | 6776093 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | + |
|---|
| Start bp | 1870053 |
|---|
| End bp | 1871813 |
|---|
| Gene Length | 1761 bp |
|---|
| Protein Length | 586 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 642755175 |
|---|
| Product | probable acyl-CoA dehydrogenase |
|---|
| Protein accession | YP_002126040 |
|---|
| Protein GI | 196156551 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.773956 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTCTGT ACCATGCCCC AACAACTGAT TTTCAGTTTT TATTAAAAGA TTGGCTTGGA
CTTGATGCCC ACTACCAAAA GCTTGGCATA GCCGATTTTG ATAGCGAATT GGCGAATGAA
ATTATTGCTC AAGGTGCCAA GTTTGCATTA GATGTAGTTG CCCCTTTAAA CCGTGAAGGC
GATGAAGAAG GCTGTAAGTT AGAAGACGGG AAAGTAACCA CCCCAAAAGG CTTCGCTGAT
GCCTATCAAG AATACGTAGC CAATGGCTGG AACGCCATGC TAGGGGTAGC CGAGTATGAT
GGCCAAGACC TACCTTACAC GATGGCTGTG CCTGTTCACG AAATGCTAAA TGCAGCAAAC
CTAAGCTGGC GTTTAACCAC CATGCTTACA GAAAGCGCTA CCCTTGCGGT AACCAAGCAT
GCTAGCAAAG AACTTAAAGA TATTTATCTT GCCAAACTGA TTAGCGGTGA ATGGACAGGT
ACCATGAACC TTACCGAGCC TCATGCGGGA ACCGATCTCA GTTTACTTAG TACCAAAGCT
GAGCCACAAG GCGACGGCAG CTATATGATC ACGGGTAACA AGATATTTAT CACGGCTGGA
GACCAAGACT GGAGCTCGAA CGTTATTCAC CTTGTGCTTG CCCGCCTTCC CGATGCGCCC
AAAGGGGTAA AAGGAATAAG TCTTTTCTTA GTACCTAAGT TCCTGCCAGA TGCGAACAAT
GAACCAGGTG AAGCAAACAC CCTGTCCGTG GGCAGTATTG AACACAAAAT GGGAATTAAA
GCGAGCCCTA CTTGCGTGAT GAATTTTGAC GGCGCTAAAG GTTACTTGGT GGGTGAAGAA
AACCAAGGTC TAGCCTGTAT GTTCACCATG ATGAATGACG CGCGCTTCCA AGTGGGCCTT
CAAGGTTTAG GGGCTGCTGA AGCCTCTTAC CAGGGTGCAC TGACTTATGC ACGTGAGCGT
GTGCAGTCTC GCGCGCCTCA AGGTATTCAA AATCCAGACG GCAAAGCTGA CCCTATTGTC
TTTCAACCTG ACGTAGCTCG AATGCTCCTT ACTCAAAAGT CTCTGATAGA AGGCTGCCGC
GCCCTTTCGC TTTTTTATGC GAAATTTATG GACGTTGAGA AGCTCGGTGA AGGGCAAGAA
AAAGAAGATG CAGAGAAAAT TCTGCAATTC TTAACGCCAA TCTGTAAAGC CTTTATGACC
GATATGGGCC TTGAAACCAC AAGCTTAGGT GTTCAAGTGT TCGGTGGCCA CGGCTTTATT
CGCGAGTGGG GAATGGAGCA GCTTATGCGT GATGTGCGCA TTGCTATGCT TTATGAAGGA
ACTAACGGCA TTCAAGCGCT TGACCTAATA GGCCGAAAGC TAACCCGCGA TGGTGGTCAA
ATGATGGAAG CGACCTATAA GGCATTCTCT GCTTTAGTTG GCGATATACA AGACAGCGAA
GCGAAAAATC TTGCGCAAGG CATCCTTGAT GATTGGCGCG CCTCTTCTGC TGATTGCTTA
GGTATGGATG CGACTACGGC AGCCTCAGCA GCCTGCGATT ATCTAGCTTA CAGTGCGTAT
TCACTCATTG GCGTACTTTG GTACAGTATG GCTGACAAAG CTCAGCATGT CGGCAATGCA
GTGCTCGCGG CATCGAAGAT GAAAACTCGT GATTTCTACA TGGAGAGAAT TCTTGTACGT
CGCGATGCTC ACAAAGCCGC ATATAAAGCA GGCCCAGAAA GTACCCTCGC CGTTTCAGGT
AATGAGTTTG ATTACCTTTA A
|
|---|
| Protein sequence | MPLYHAPTTD FQFLLKDWLG LDAHYQKLGI ADFDSELANE IIAQGAKFAL DVVAPLNREG
DEEGCKLEDG KVTTPKGFAD AYQEYVANGW NAMLGVAEYD GQDLPYTMAV PVHEMLNAAN
LSWRLTTMLT ESATLAVTKH ASKELKDIYL AKLISGEWTG TMNLTEPHAG TDLSLLSTKA
EPQGDGSYMI TGNKIFITAG DQDWSSNVIH LVLARLPDAP KGVKGISLFL VPKFLPDANN
EPGEANTLSV GSIEHKMGIK ASPTCVMNFD GAKGYLVGEE NQGLACMFTM MNDARFQVGL
QGLGAAEASY QGALTYARER VQSRAPQGIQ NPDGKADPIV FQPDVARMLL TQKSLIEGCR
ALSLFYAKFM DVEKLGEGQE KEDAEKILQF LTPICKAFMT DMGLETTSLG VQVFGGHGFI
REWGMEQLMR DVRIAMLYEG TNGIQALDLI GRKLTRDGGQ MMEATYKAFS ALVGDIQDSE
AKNLAQGILD DWRASSADCL GMDATTAASA ACDYLAYSAY SLIGVLWYSM ADKAQHVGNA
VLAASKMKTR DFYMERILVR RDAHKAAYKA GPESTLAVSG NEFDYL
|
|---|
| |