Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | MADE_01736 |
Symbol | |
ID | 6776177 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Alteromonas macleodii 'Deep ecotype' |
Kingdom | Bacteria |
Replicon accession | NC_011138 |
Strand | - |
Start bp | 1864146 |
End bp | 1865195 |
Gene Length | 1050 bp |
Protein Length | 349 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 642755169 |
Product | HlyD family secretion protein |
Protein accession | YP_002126034 |
Protein GI | 196156545 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCTTCAC GATTTTCTTT ATCGCCCTTG TTAATTGGTG TGGTTTTGCT TGCTGGTATA GTGGTGTACT TGAATATGCC AGAAGAGCAG AGTGCGAATA AAGGTGGTCC TAGGGCTACG CCAGTCAATA CCGCGATGGT TTCCTCTCAG GCATTTCCTA TTACCATCGA ATCGCTAGGC ACAGCAATTG CCAATGAGTC GGTCAATATC ACTGCTCAAG TTACCGATAC AGTAAAGGCA CTTCATTTTG AAGATGGCGA TGAAGTGAAA AAAGGAGCGC TGCTGGTTCA GCTTAACAAT ACCGAGGAGC GCGCTCGAGT CGAAGAGTTA AAAGCAAACA TTGAAGAGGC TAAACGTCAG TTCACCCGTA TAGCGGACTT GCGCCAGTCT AACGCCACTT CCGAACAATT ACTCGATGAG CAACAGGCCC GCGTAAAAGC GCTTGAAGCA CAACTAGATA TCGCGCAGGC TCAGCTTAAT GATTTGCAAA TTCGCGCGCC GTTTAGTGGG CTGTTAGGTA ACCGCGAGAT CAGTGTTGGC TCACTGGTGC AGCCAGGCAA TACCATCACT TCTTTAGATG ATATTAGCGT AATAAAGGTC GACTTTAGTG TGTCTGAAAA CCACTTGGCT AGTGTGGCAA AAGGGCAGAC GATCACCGCT TCGTCGGTAG CCTACCCCGG TGAAAGCTTT TCGGGAAAGA TCACGAATAT CGATACACGA CTTGACCCTA TTAGCCGCTC TATTCGAGTT AGGGCGGCGC TAGATAACCA AGATAAGCGC TTGCGCCCTG GCATGTTGTT AACCGTAGTA GTAGAAAAGC GGGTGTTAAA TACCTTGGTA CTGCCAGAAA AAGCACTGGT ACCCGTTCAA GACAAGCAAT TCGTTTATGT AGTAAAGGAC GATGTAGCGC ACCAAACCGA AGTCGAAATA GGGGAGCGCC GTCCCGGCCT GGTACAAATA GTAAGTGGCT TAAGCGCAGG GGACGAAGTG ATAACCGAAG GTACGCTTCG CGTTCGCGAC CAGTCGCCGG TTAATGTATT AAACCGCTAG
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Protein sequence | MSSRFSLSPL LIGVVLLAGI VVYLNMPEEQ SANKGGPRAT PVNTAMVSSQ AFPITIESLG TAIANESVNI TAQVTDTVKA LHFEDGDEVK KGALLVQLNN TEERARVEEL KANIEEAKRQ FTRIADLRQS NATSEQLLDE QQARVKALEA QLDIAQAQLN DLQIRAPFSG LLGNREISVG SLVQPGNTIT SLDDISVIKV DFSVSENHLA SVAKGQTITA SSVAYPGESF SGKITNIDTR LDPISRSIRV RAALDNQDKR LRPGMLLTVV VEKRVLNTLV LPEKALVPVQ DKQFVYVVKD DVAHQTEVEI GERRPGLVQI VSGLSAGDEV ITEGTLRVRD QSPVNVLNR
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