| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_01510 |
|---|
| Symbol | |
|---|
| ID | 6775954 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | + |
|---|
| Start bp | 1617084 |
|---|
| End bp | 1618817 |
|---|
| Gene Length | 1734 bp |
|---|
| Protein Length | 577 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 642754946 |
|---|
| Product | D-lactate dehydrogenase |
|---|
| Protein accession | YP_002125813 |
|---|
| Protein GI | 196156324 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0277] FAD/FMN-containing dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGTAA ATGTTGACAC TCAGTCTTTG ATTGCATCTA TACGAGATGT AGTAGGGCAA
GCCTATTTGT TAACTGATCA AGCGAAAAAG CAACCGTACA CCAAAGGGTT TCGCTTTGGT
GCAGGCGAGG CGCTTGCGGT GGTGCGACCC GGTACGCTTG TCGAAATTTG GCGAGTGCTC
AAATTATGTG TCGAGGCCGA CGTTGCAGTT ATCATGCAGG CAGCTAATAC TGGCCTAACC
GGTGGCTCTA CGCCAGATGG TAAAGACTAT GACAGACCGC TGGTTATTAT CAGCACCATG
CGTATTGACG ACATACAGTT AGTGGATAGC GGTAAGCAAA TCGTAGGGTT AGCGGGCAGT
ACCCTTTTTG GATTGGAAGA AACGCTAGCG CCTTACGGGC GCGAGCCTCA CTCGGTGATT
GGTTCATCAT GCATTGGCGC ATCTATTGTG GGCGGTATTT GTAATAACTC TGGCGGCGCA
TTGGTTAAAC GGGGTCCAGC GTACACCGAA CTTGCGCTTT TTGCCCAAAT CGACGCTAAT
GGCAATCTAT CTTTGGTAAA CAATCTGGGG ATTAACCTAG GTAGTGAGCC AGAAGAAATT
CTGAATAATC TTGAGAACAA ACGTTACAAA GAAGCTGACG TTCAGCACCC TGACGCTCGT
GCATCAGACA ACGAGTATGA TGAACGAGTT CGAGACGTTG ATTCAGAAAC ACCTTCTCGC
TTCAATAATG ACGGCAGAAG ACTTCATGAA GCTTCAGGCT GTGCAGGTAA ACTCGCGGTG
TTTGCCGTGA GACTAGACAC TTTCCCTATA CCTGAAAAGA AACAGGTGTT TTACGTAGGG
TCTAACGATG CTGCGGTTTT CACTAAGGTG CGTCGCGACA TACTTTCTAC ATTTAAAAAC
TTACCTGATT CAGGTGAATA TCTGCACCGC GACTGCTATG ACGTATCTAA AAAGTATGGC
AAAGATATGT TTATCGTTAT CAGTAAACTT GGCGCGAAAT TTATTCCGAA GCTATTTGCT
TTTAAACGCA AGTTCGACGC ATTTACCGAC AAACTTGGTT TTCTACCCAA CAAAATGTCA
GACCGTGTTA TGCAATATAT GAGCTACTTG TTCCCAAGTC ATCTGCCTAA GCGCATGGAA
GAGTACAGAG ACAAGTATCA ACATCATTGG ATTTTGGAAA TGAGTAACGT CGGGGTAGAA
GAAGCTAAAG CCTACCTTGA TGAATTCTTC AAAACGAATG AAGGTAGCTA TTTCGAGTGT
ACGCAAGAAG AAGCGGATAA AGCAATTTTA CACCGCTTTG TTGCCGGTGG CGCGATTGGT
CGCTACCACG TGATGCACAG TAAAGAAGTG GGCGCCATGA TGACCATCGA CGTCGCGCTT
CGCCGTAATG ACCCAGATTG GTTTGAAGTT TTGCCTAAAG AAATAGACGA CCAGATTGAC
ACTAAGCTTT ATTATGGTCA CTTGTTTTGC CATGTTATGC ACCAAAACTA CGTATTGAAA
AAAGGGGCCG ATGCCAAACT GCTGAAAGGC AAAATTTTAG AAACCTTTGA CGCGAGAAAC
GCGGAATACC CAGCAGAACA TAACGTGGGG CACGAATATT TTGCGAAAGA CGCGCTTAAA
AACTTCTACC GAGAGTTAGA CCCTACCAAC AGCTTCAACC CGGGCATAGG TAAAACCACC
AAGCGTAAAA ATTGGGCCGA GCAGAGCGGC GGATGCTGCG GCGGAAACCA TTAG
|
|---|
| Protein sequence | MTVNVDTQSL IASIRDVVGQ AYLLTDQAKK QPYTKGFRFG AGEALAVVRP GTLVEIWRVL
KLCVEADVAV IMQAANTGLT GGSTPDGKDY DRPLVIISTM RIDDIQLVDS GKQIVGLAGS
TLFGLEETLA PYGREPHSVI GSSCIGASIV GGICNNSGGA LVKRGPAYTE LALFAQIDAN
GNLSLVNNLG INLGSEPEEI LNNLENKRYK EADVQHPDAR ASDNEYDERV RDVDSETPSR
FNNDGRRLHE ASGCAGKLAV FAVRLDTFPI PEKKQVFYVG SNDAAVFTKV RRDILSTFKN
LPDSGEYLHR DCYDVSKKYG KDMFIVISKL GAKFIPKLFA FKRKFDAFTD KLGFLPNKMS
DRVMQYMSYL FPSHLPKRME EYRDKYQHHW ILEMSNVGVE EAKAYLDEFF KTNEGSYFEC
TQEEADKAIL HRFVAGGAIG RYHVMHSKEV GAMMTIDVAL RRNDPDWFEV LPKEIDDQID
TKLYYGHLFC HVMHQNYVLK KGADAKLLKG KILETFDARN AEYPAEHNVG HEYFAKDALK
NFYRELDPTN SFNPGIGKTT KRKNWAEQSG GCCGGNH
|
|---|
| |