| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_01310 |
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| Symbol | |
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| ID | 6775591 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alteromonas macleodii 'Deep ecotype' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011138 |
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| Strand | + |
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| Start bp | 1405908 |
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| End bp | 1408589 |
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| Gene Length | 2682 bp |
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| Protein Length | 893 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 642754747 |
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| Product | TPR domain protein |
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| Protein accession | YP_002125618 |
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| Protein GI | 196156129 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTTCTAA GTGGGTGTGG TGAGGTGAGT AAAGAAGAGC GTTTAGCGAT AGCCGACGCT
GCTTCTGAAA GCGAGAAGTA TGATGATGCG CTAATACAAC TTAGAAGCAT AGTCTTATCT
GAGCCCACAG ATATGGCTTC GCGAGAAAAA CTTGCAAAAG TTTATTTTAA TATTGGCAAT
TTATCAGGCG TGATAAAAGA GCTTGAGCTT GTAGAGGAAT CTGTCTCTTT GAAAGATAGC
GAAAGTATAG GGATGCTTTT GATGAGTTAC CTTTTTATTG GAAGGTACGA GGACGCGATA
CTGTTTTATC AACGCAGCAC TGAAGCCAAG AAACACGACG AAGCAGCTAT TGTTGCGTAT
GTAGCTGCGA TAAAAAATGG TAGTAGAGCA CAAGCTGAAA CTGCTCGAGT AAAAAGAGCA
TTATCTAACA CAAAGTCTGA CCTCTTCTTA GCAGTATCCA ACTATGTAAA TAAAAACTTC
GCGAAATCAA AGAGCTATAT CGAGAAAGTT GAAGCACCTT TCTTTCTTTT CCCATTATTG
ACCGACTTAA AAGCACAACT CGCTATGAAA TCAGGAGAAA ATGAAAAAGC TGTTGCGCAT
ATGACAGAAC TCTTAGACAT TTGGCCTAAT ATTGCGATTG TACAGATCAC TTCAGCACAT
GCTTTCGCTT TAAACGGTGA GTATGACAAA GCGTTCAACA TAATTAATTC AGTATCTTCT
GAAGCTCGTT CTCCATGGTT GGATAAAATT TCCGCCGAAA TTTATCTTAG AAAAAATGAG
AATGAGAGTG CATTAAAAGC TGCTGAAGAA GCTATTGATA AAGGGTTATC TATAGAAGAT
AACTTCATAA TCGCAGGAAC TGCTGCTTTT AAACTCGGTA GAAACGAAAC CGCATATGAA
TATCTTAAAA AAGCCTATGC TAAAAATCCA CAGAATGCCT ATACAATGCG GCTTTTATCA
GGGGTCAGCA TTGAACTAGG TTATGTCGAC GAATCCATCG AACTTATGAA AGCGGCTGAT
TTTTCTAATG CAGACAACGT TGCCTTTATT GCCAATACCA GTGAATACCT GAGCCAGGTT
GGAAAAAATC AAGAGGCAGG CGAGTTGATA AAAGAGGTCC ATTCTCGAAA TCCTGCAAAT
GCATCGCTCC TATACAAATT GATTGCTCAC AATATTGATA ATGAAAATTT AGATAGTTTC
GAGCTTGATA TTAAACGCCT AGAAAATCTT GGTGGCCCTT CTCTTCAACT CTTAGCAGTG
AAACTGAAAA AGCTAATCAA GGATGGCCAA TATGAACAAG CAATCGCTTT GACAGAGGAA
AATAGAACTA ACGTTCCACC AGAAGAAAGC GAAATTTTGT CTCTACTTTA CTCGACTGTT
CAAGTGAATA ATAAACAATA TCAAAAAGCG CTTGATGAAA TTGAAAAAAT TGAAGACAAC
GAAAACTCTG ACTTGCTGAA TTTAAAAATG TTAAGTGCAT ATGGAGCAGG GCAGATTGAC
CTAGCAACTG ATGCTGCACA AAGGCTTGTG GAGTTGAATC AAAATTCAGC TAGTGTACTT
CAATTATTAC AAATGCTTGA AGAGAACAAT AATCTAGACA CAGAGAGTGC GTTAAGGAGA
TGGAAGGCGA AGAGTGACTC TCCAGCTCTT TATGACGCTG GGCTAATGTA TCTTTACATT
TACAAAGGTG AGCCTAACCG TGCATTTCAA ATTGCACAAA GTAACGAAGT TGCATTGTCT
TATATAGAAA ACCGCCTTTG GCTGAATACG CTAATCGAGA TAGGTGAAAA AGCAGAAATA
CTCAGCTACA CAAACAAGTT ATTGACTCAG GAGGACGTCG GTGAAAACCC CAAGATATTT
GCTGATATCA TTGCGTTTTA CTTGAGAAAC TCTTTTAATC AAGAAGCATT AAGCGCTAGC
GAGAGCGCTC TTAATACGTT TCCTGACGAA GTGAGCTTTA AGATTGCAAA GCTTGAAAGT
CTTATTAACC TGGGAGCTCT TGAAAGAGCT GAAGTTGCCA TAAATTCATT AAAAAATAAC
GATGTGCCGA AATGGTTAGT AACTCACTTC GAAGGGCTTG TAAGTCTTCG TAGTGGTGAC
GTTAAATCTG CTAAATCACA ATTAGAGCAG GCATTACTTA TCAATCCAAG TGTCCCTACA
GCTCTGTTAG TAGCGCAACT TAATAAAGAA TCAGAACCTC TGACAGGACT AAATGCTCTC
GAGAGTGTTT TTATAGATTC TAATAACGAA AAAGATCTAC ATATACTTGC AGAGTATGCC
GCTTCGGTAG GTTTTTTAGA TAGAGCACTA GCCTACTATG ACCAGATTGT CTATAACTTC
CCAGAATCAC ATATTGCACT TAATAACAAA GCAAACATAT TGATTGAAAA AGAGAAGTTT
ACTGAGGCAA TAGAGCTCGC AGAAAATGCT TATAATATTC GCCAGAATCC TGCCTACTTA
GATACAAAAG GTTGGGCTGA ATACAAAGCT GGTCAAGTTG ATCGCGCAGT AAGTACATTT
AAGTTGCTAC TCGAAAGTCA GCCTCGCTAC GAAGCAGCAG CAGTCCATCT TGCTGAAATC
TATCTTGCTC AGGGAGATAG GGCATCTGCA TCGAAACTTA AGCAAGCTTT TCAATCATCA
GAGAACAGTA GATTCAAGAG CAGTTGGGAA GTCATAGATT AG
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| Protein sequence | MVLSGCGEVS KEERLAIADA ASESEKYDDA LIQLRSIVLS EPTDMASREK LAKVYFNIGN
LSGVIKELEL VEESVSLKDS ESIGMLLMSY LFIGRYEDAI LFYQRSTEAK KHDEAAIVAY
VAAIKNGSRA QAETARVKRA LSNTKSDLFL AVSNYVNKNF AKSKSYIEKV EAPFFLFPLL
TDLKAQLAMK SGENEKAVAH MTELLDIWPN IAIVQITSAH AFALNGEYDK AFNIINSVSS
EARSPWLDKI SAEIYLRKNE NESALKAAEE AIDKGLSIED NFIIAGTAAF KLGRNETAYE
YLKKAYAKNP QNAYTMRLLS GVSIELGYVD ESIELMKAAD FSNADNVAFI ANTSEYLSQV
GKNQEAGELI KEVHSRNPAN ASLLYKLIAH NIDNENLDSF ELDIKRLENL GGPSLQLLAV
KLKKLIKDGQ YEQAIALTEE NRTNVPPEES EILSLLYSTV QVNNKQYQKA LDEIEKIEDN
ENSDLLNLKM LSAYGAGQID LATDAAQRLV ELNQNSASVL QLLQMLEENN NLDTESALRR
WKAKSDSPAL YDAGLMYLYI YKGEPNRAFQ IAQSNEVALS YIENRLWLNT LIEIGEKAEI
LSYTNKLLTQ EDVGENPKIF ADIIAFYLRN SFNQEALSAS ESALNTFPDE VSFKIAKLES
LINLGALERA EVAINSLKNN DVPKWLVTHF EGLVSLRSGD VKSAKSQLEQ ALLINPSVPT
ALLVAQLNKE SEPLTGLNAL ESVFIDSNNE KDLHILAEYA ASVGFLDRAL AYYDQIVYNF
PESHIALNNK ANILIEKEKF TEAIELAENA YNIRQNPAYL DTKGWAEYKA GQVDRAVSTF
KLLLESQPRY EAAAVHLAEI YLAQGDRASA SKLKQAFQSS ENSRFKSSWE VID
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