Gene MADE_00870 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMADE_00870 
Symbol 
ID6775123 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAlteromonas macleodii 'Deep ecotype' 
KingdomBacteria 
Replicon accessionNC_011138 
Strand+ 
Start bp916874 
End bp917542 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content41% 
IMG OID642754302 
ProductCRISPR-associated protein, Cse3 family 
Protein accessionYP_002125178 
Protein GI196155689 
COG category 
COG ID 
TIGRFAM ID[TIGR01907] CRISPR system CASCADE complex protein CasE/Cse3 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTTTTAT CAAAAGTCAC AATGGTATCG AGCCCGCAAA CAGCCCAAGA ATTAGCAAAG 
CTTCAACGCA ACGGAGTTTA CGCATCACAC CAGTTAATAT GGCAGTTATT TTCAAATGTT 
ACAGAAAGAT CTTTTCTGTA TCGGGAAGAA ATGGGTATAA CGGGCATGCC GGAATTTTAT 
GTTTTATCCA AAACTGAACC GCAAGCAAGC CTACCTATCT TTTCGTGTGT AACCAAAGTA 
TTTGAGCCTA AATTAAAAAA AGGGCAACGG CTGTCATTCA AGCTGAGAGT TAATCCTACC 
GTTTGTGTAA AAGGTGAGGA TGGAAAGCAG CGCCGCCATG ATGTGATGAT GCAGGCGAAG 
TATAACGTTA AAGACGAATT ACCGGATGCA CAAACGCTCA AGATGCATAT GGAACAGGCT 
GCGATTAATT GGTTAAATAA CGAGAAAAGG TTGGATGAAT GGGGGATTAC TCTGGATTTC 
CAACCGTCCA TTGATGGCTA TACCCAGCAC AAGGTTCAGA AAAAACGTCA TCAGATACAG 
TTTTCAAGCG TTGATTATCA GGGCATGTTA ACAGTTCAAG ACCCACTAAA ATTCATTAAT 
CAATACGCCA AGGGATTTGG CAGAGCCAAA GGAATGGGCT GCGGATTAAT GATGATTAAA 
CGAGCGTAA
 
Protein sequence
MFLSKVTMVS SPQTAQELAK LQRNGVYASH QLIWQLFSNV TERSFLYREE MGITGMPEFY 
VLSKTEPQAS LPIFSCVTKV FEPKLKKGQR LSFKLRVNPT VCVKGEDGKQ RRHDVMMQAK 
YNVKDELPDA QTLKMHMEQA AINWLNNEKR LDEWGITLDF QPSIDGYTQH KVQKKRHQIQ 
FSSVDYQGML TVQDPLKFIN QYAKGFGRAK GMGCGLMMIK RA