| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_00857 |
|---|
| Symbol | |
|---|
| ID | 6777734 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | - |
|---|
| Start bp | 900904 |
|---|
| End bp | 901752 |
|---|
| Gene Length | 849 bp |
|---|
| Protein Length | 282 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 642754289 |
|---|
| Product | putative regulatory protein LysR Family |
|---|
| Protein accession | YP_002125165 |
|---|
| Protein GI | 196155676 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.977241 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACAGC TTTCTTTAGA CACATTACGT ACCTTCGTAA GCGTTATCGA ACTGGGTGGC
TACGCAAAAG CGGGCGACTT TTTGGGTCGC TCTCAACCTG CCATTAGCTT GCAAATTAAA
AAGCTAGAGT CGCAGTTAGA CAGAAAGTTA TTCACCAAAG TCGGTCAGCG CCACATACCT
AGTGCCGATG GCAACTGGCT TTACCCAAAA GCGAAAGAGC TACTAGAGCT TAACGACAAT
ATTTTTCGAA GCTTAACCCC TGCTCCATTA AGCGGGCGGT TGCGTTTAGG CATTCCCAAT
GAATTCGCGT CTACCCTATT ACCGGGCTTA ATTGGTGAGT TTTCAAAACG CTACCCTGAT
GTGTCTTTAG AAGTCACGTC GGCATTAAGC CGCGACCTCC TGCACCCGAG TCAGCGCGAT
CACTTTGACC TAATTCTGGC GCTGGTAAAC CCCAACGAGC AAACCGAAGG TGAAGTCGTG
CTCGAAGACG ACGTTGTATG GGTTGGCGAC AACGCTCATC CGTTGGTAGG ACATAACATT
CCGTTAGTGT TAGCGCCAGA TGGCTGTATG TATCGAAGCC GCGTAATTGA GCAGTTAAAG
CAGCAAACCT TTGCATGGAA GATTAGCTAT ACCAACGCTG ATTTAGGCGG GCTGGTAGCG
GCTATTCAGC AAGGTCTTGG CGTCACCGCG CTCGCGAAAT CAAGCTTGCC TGCCAACTTA
GCGGTGTTAA ACCACCCGCA TTTGCCTAAG CTTGGTAAAG TGAATATTTG CCTGTTTAAC
CAAGACACCC AGCACCCTGT GATAAGCAAA ACCTTGGCGG AATTCTTTAA GGTGCGGTTG
AGAGGGTAA
|
|---|
| Protein sequence | MKQLSLDTLR TFVSVIELGG YAKAGDFLGR SQPAISLQIK KLESQLDRKL FTKVGQRHIP
SADGNWLYPK AKELLELNDN IFRSLTPAPL SGRLRLGIPN EFASTLLPGL IGEFSKRYPD
VSLEVTSALS RDLLHPSQRD HFDLILALVN PNEQTEGEVV LEDDVVWVGD NAHPLVGHNI
PLVLAPDGCM YRSRVIEQLK QQTFAWKISY TNADLGGLVA AIQQGLGVTA LAKSSLPANL
AVLNHPHLPK LGKVNICLFN QDTQHPVISK TLAEFFKVRL RG
|
|---|
| |