Gene MADE_00486 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMADE_00486 
Symbol 
ID6777607 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAlteromonas macleodii 'Deep ecotype' 
KingdomBacteria 
Replicon accessionNC_011138 
Strand- 
Start bp511802 
End bp512476 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content45% 
IMG OID642753918 
Producttranscriptional regulator, TetR family protein 
Protein accessionYP_002124798 
Protein GI196155309 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGAAGTG CATTGCCTAC GATAAAAAAG CAAGGTCGAC CAAAGAGTGA AGAAAAATAT 
CACATGATTT TGCATGCGGC TTCTCGCCTT TTCTTGAAAG AAGGGTTCGC TAACACCTCA 
ATGGACACCG TCGCGAAGGC CTCTGGTGTA TCTAAACAGA CGGTCTATTC CCACTTTGAA 
AGCAAAGACG CTTTATTTAA GGCGGCAATT ACCTCGAAAT GCCGGTCATA TCAGCTCGAT 
ACCCAGCAAC TTATCAACGC AACCTCAAAC GCCCTTTCAC TATTTGAATG TTTACAAAAA 
GTAGGCCATC AGTTTATGCG ATTGTTGCAA GACCCAGACG CCATCGCCAT TTTTCGCGTC 
ATCATTGCAG AGGCAGTAAA CAACCCCCAT GTCGCAACGC TGTTTTATCA GGCTGGCCCT 
GAAGCGTCAC TTGAGACATT AAGCGATGTG ATTGAGACGT TTGGTCGAGG CAGCTTAAAT 
CACGACCTCG CTCACCAGCT AGCGTGTGAC TATTGCTCGT TGTTAAAAGG TGATTATCAC 
ACCATGATGC TTTGTGGCAT TCAATCGCCA CTTTCGAATG AAGAAATTCA GTCACACGTG 
GCACAAGCAG CGGAAAAAAT TCTTTTACTC TTTACACATT ATACGCAGCA ATCCGGCTCA 
CGTAGTTCCC TGTAA
 
Protein sequence
MRSALPTIKK QGRPKSEEKY HMILHAASRL FLKEGFANTS MDTVAKASGV SKQTVYSHFE 
SKDALFKAAI TSKCRSYQLD TQQLINATSN ALSLFECLQK VGHQFMRLLQ DPDAIAIFRV 
IIAEAVNNPH VATLFYQAGP EASLETLSDV IETFGRGSLN HDLAHQLACD YCSLLKGDYH 
TMMLCGIQSP LSNEEIQSHV AQAAEKILLL FTHYTQQSGS RSSL