Gene MADE_00469 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMADE_00469 
Symbol 
ID6777477 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAlteromonas macleodii 'Deep ecotype' 
KingdomBacteria 
Replicon accessionNC_011138 
Strand- 
Start bp491690 
End bp492343 
Gene Length654 bp 
Protein Length217 aa 
Translation table11 
GC content48% 
IMG OID642753901 
Product2,5 RNA ligase 
Protein accessionYP_002124781 
Protein GI196155292 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1514] 2'-5' RNA ligase 
TIGRFAM ID[TIGR02258] 2'-5' RNA ligase 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGAAGCT TTATTGGTTT AGATCTTAGC GCCACAGAAA AACTTGCTTT GGATAGCTGG 
CGTCAACAGG CATTGCCTGA AATCATGCCT CGCCAATGGG TAAAAAACGA GTCGAGCAGG 
TCTCGAAAGT CTGGCAACAA GCGCAACAAT CACAATAGTG GACAAGGACC TTCGCTACCT 
TATGCCGTGC CCGCGGCAAA CTTTCACATC ACACTCAGCT TTTTAGGCGA GATAAATCAC 
CGTCAGCACG AAGCGCTGGT GTATGAACTC GACCAGCTCG TTAGCGAACC ATTTTCATTA 
ACCCTAAATG CAACAGGGTT GTGGAATGGC CCCAAAATCC TATTTGCTGC GCCTACGGAT 
ACACCAAAGG CACTAAGTGA ACTCGCCAAG TTATCGCGTA AAGCTGCCCG CAAAGCAGCA 
ATAGAAGTAG AAAACAGAGA ATATAAGCCT CACGTTACCG TTGTTAGAAA GGCTACATCA 
ACTTTACCTC TGCCACTTTA CAGCCCCAGT GTAGACGTTC ACGTCTCGGC ATTTCACCTG 
TTTGAGTCTG TCACTACACC TCAGGGGGTT ACCTACCCTG TTCGCCAGTC TTGGCCGTTA 
AAACACAATA TGTCGGTAAG AGAAAAGCTA CGTCGGGGAA TAACCGACGA GTAA
 
Protein sequence
MRSFIGLDLS ATEKLALDSW RQQALPEIMP RQWVKNESSR SRKSGNKRNN HNSGQGPSLP 
YAVPAANFHI TLSFLGEINH RQHEALVYEL DQLVSEPFSL TLNATGLWNG PKILFAAPTD 
TPKALSELAK LSRKAARKAA IEVENREYKP HVTVVRKATS TLPLPLYSPS VDVHVSAFHL 
FESVTTPQGV TYPVRQSWPL KHNMSVREKL RRGITDE