| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_00443 |
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| Symbol | |
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| ID | 6777877 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alteromonas macleodii 'Deep ecotype' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011138 |
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| Strand | - |
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| Start bp | 468072 |
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| End bp | 470288 |
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| Gene Length | 2217 bp |
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| Protein Length | 738 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 642753875 |
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| Product | type II secretion system protein E:GAF domain |
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| Protein accession | YP_002124755 |
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| Protein GI | 196155266 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAGTAG TGAATAATCA GCAAACTTTT GCACAAATAA AACGCATCCT AAACAACCAC
TCTACATTAC TAGATGCATA TGGTCTTTTA GAGCCTATGA TACTAGGACT GTTCGATGCC
AAGCGCATGA GTATTTTCCA GCGCCGTCGT CAGCATCAAG ACTTGGTTGC GCGTTTTAAA
ACGGGTAAAG AAACCCTTGA GATAAAAGTG CCTATCAGCC CTATGTCAAT TGCTGGCTAT
GTCGCCCTTT CTCAAAAACC CGTAGTTATC GACGACCCTT ACAACCCCAC ATTACTTCAA
AGTATTCACC CTCGTTTGCG CTTCGACGGC AGGTTCGATA AAGACAGCGA TTTTAAAACT
CAAAACATTC TCTGTGTGCC GATTATGAAC GCCGGCGTGT TGATGGGTGT TATACAAATT
ATAAATAAAA ACGATGGCGC GTTCACTGAG GACGATTTAA AGCTTGGCAA TGCGCTTGCG
CTCATACTCG GTGATAAATT CAGGTTCGAA TTAGGGGGCA CCCATAATCC CTTTGACCTT
CTAGTTCACA AGAGTCTTTT AGAAGAAGCC ACGCTTAAGG ATATTCAAGC TACTACGCCA
GATATAAAAG CGTTTATCCA ACGCTTAGTA TCTGAGTACC GAATCTCAGA AGATGAGATT
GGTAACTCCC TCTCTATTCA CTATCAGGTT CCTTTCATTC CTTACCTACC CGATAAGTAC
CACAGGTTTG AAAACGAAAG TCGTTTAAAT GTTTCTTATT TAAAAAGGAA CTACGTAGCG
GTGATTGCCG ACGCGCATGA CAAGCCTATT GTATTAATGG CAGAACCCAA TAATGCTGCG
CTTCTCATGG AAATAGAAAG CGCTATGGGT ATAGATAGTT ATGAAATTGC TGTCAGCCTG
CCAAATTTGA TTTTGCAATA CTTAGGCGAA CATAGCGGTA GCAGCGGCCC AGGAGAGATG
AGTGACATTC TCGATGAAAT TGGGTCGTCA GCGGAAGACA GCGATGAACA AATTGATGAG
CTATCGGACG ACGCGCCGGC GGTAGTGCGC TTGGTAAGCA GAATTTTACA TGACGCTAAA
CGCCTTAATG CTTCAGATAT CCATATAGAC CCAGAAAAAA ACGCGCCAAC ACGGGTGCGG
ATGCGAGTTG ATGGCGTTTG TCGCGATATG AACCAAGTGC CAAATTCTCA CCATAGTGCC
GTTATTGCAC GCATCAAGAT AATGTCGAAT TTGAATATTG CGGAAAAACG GGTGCCCCAA
GACGGAAAGC TCGCATTTAG AATGAACGGG CAGCTTGTAG AAGTTCGTGT AGCCACTATT
CCAACGGTAG CGGGTGAAGG CGTAGTAATG CGGATATTGG CATCAGGTGG TGCCATGCCT
ATTGATAAAA TGAACTTGGC GCCTAGCAAC CGTGCCCGAC TAGAAGACAT GATTAAAAAG
CCTCACGGCA TTTTACTTGT TGTGGGTCCA ACAGGCTCGG GTAAAACCAC TACCCTGCAC
GCTATCTTGG GCTATTTAAA TACACCTGAA AAGAAAATTT GGACGGCCGA AGATCCAGTA
GAAATTACCC AGCCTGGTCT GCAACAGGTT CAAGTAAGCC CTAAGATTGG CTTTAACTTT
GCTGCAGCGT TGCGCGCATT TTTACGTGCC GACCCAGATA TTATTCTTAT TGGTGAGATG
CGTGATAAAG AAACGGCGCA CGCCGGTATA GAAGCGTCTT TAACGGGTCA CTTAGTGCTG
TCGACACTGC ATACTAACTC TGCACCCGAA ACCATTACCC GTTTACTCGA CTTAGGCCTT
GATCCGGTTA ACTTCTCAGA TGCCTGTGTG GGTATTTTGG CGCAACGCCT CATTCGTACC
TTATGTGGCA ACTGTAAAGA GAAGTATATC GCCACTGAAA CCGACATAGC GTTCATCGAG
CGTCAATACG GTAAAGAGCT CATGGCTGAG CTGAACGTGA AAACGCCCCT TGAACTGTAT
AAGGCTAACG GCTGTGAAGC CTGTGGCAAT ACAGGCTATA AAGGGCGTAC AGGTGTGCAT
GAGCTATTGG GTATGACGCC CGAACTACGC TCCCTTGTAT ACAAAGAAGC AAGCGTAGCA
GATATGAAAG TTCAGGCCGC TAAAGATGGA ATGCGTACCC TCGTTCAAGA CGCTATTTAT
AAAGTCATAA AGGGTGATAC GGATTTAGCG CAAGTTCAAA TTGTTGGTGG AGAATAA
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| Protein sequence | MEVVNNQQTF AQIKRILNNH STLLDAYGLL EPMILGLFDA KRMSIFQRRR QHQDLVARFK
TGKETLEIKV PISPMSIAGY VALSQKPVVI DDPYNPTLLQ SIHPRLRFDG RFDKDSDFKT
QNILCVPIMN AGVLMGVIQI INKNDGAFTE DDLKLGNALA LILGDKFRFE LGGTHNPFDL
LVHKSLLEEA TLKDIQATTP DIKAFIQRLV SEYRISEDEI GNSLSIHYQV PFIPYLPDKY
HRFENESRLN VSYLKRNYVA VIADAHDKPI VLMAEPNNAA LLMEIESAMG IDSYEIAVSL
PNLILQYLGE HSGSSGPGEM SDILDEIGSS AEDSDEQIDE LSDDAPAVVR LVSRILHDAK
RLNASDIHID PEKNAPTRVR MRVDGVCRDM NQVPNSHHSA VIARIKIMSN LNIAEKRVPQ
DGKLAFRMNG QLVEVRVATI PTVAGEGVVM RILASGGAMP IDKMNLAPSN RARLEDMIKK
PHGILLVVGP TGSGKTTTLH AILGYLNTPE KKIWTAEDPV EITQPGLQQV QVSPKIGFNF
AAALRAFLRA DPDIILIGEM RDKETAHAGI EASLTGHLVL STLHTNSAPE TITRLLDLGL
DPVNFSDACV GILAQRLIRT LCGNCKEKYI ATETDIAFIE RQYGKELMAE LNVKTPLELY
KANGCEACGN TGYKGRTGVH ELLGMTPELR SLVYKEASVA DMKVQAAKDG MRTLVQDAIY
KVIKGDTDLA QVQIVGGE
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