Gene MADE_00259 details

Gene Information

• Locus tag: MADE_00259
• ID: 6776732
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Alteromonas macleodii 'Deep ecotype'
• Kingdom: Bacteria
• Replicon accession: NC_011138
• Strand: +
• Start bp: 278353
• End bp: 278814
• Gene Length: 462 bp
• Protein Length: 153 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 642753687
• Product: putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshC (pilus type IV)
• Protein accession: YP_002124571
• Protein GI: 196155082
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG2165] Type II secretory pathway, pseudopilin PulG
• TIGRFAM ID: [TIGR02532] prepilin-type N-terminal cleavage/methylation domain

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGAAAA ACGGTTTTAC ACTCGTAGAA CTTATTATAA CCATCTTGGT TATTGGGGTG 
CTGGCGGTAA CCGCCGCACC TCGCTTTCTT GGTAACGACA CCGAAGAGGC CATTGCTCTT 
CGCGACCGAA CCCTTCAATT TGTACGTAAT ATGCAGCTTC GCGCCATGCA AAACGTACAA 
GACATTAGCT GTGTGAAAAT ATCCGCGTCA ATTATTGCAC CGCCTGCTGG GCACGACTGT 
GCAAATGCCC TATCTACCGC CTTCGATAGT GATCAAGTTG TCAACGCATC CAGCACCGAT 
TTTACGTTTC AAACGGCAGA TGAGAACGGC GATAGCTTTT CTCAAATCCA GTTTGACGGC 
TTTGGCCGCC CACGAAATAT TGCCTGCGCC ACCACCTGCA AAATTCAAAT AAGCACCTTT 
GCGATGTGCC TTCAAAATGA AGGGGCAATT TATGCGTGCT AA 

 

Protein sequence

MKKNGFTLVE LIITILVIGV LAVTAAPRFL GNDTEEAIAL RDRTLQFVRN MQLRAMQNVQ 
DISCVKISAS IIAPPAGHDC ANALSTAFDS DQVVNASSTD FTFQTADENG DSFSQIQFDG 
FGRPRNIACA TTCKIQISTF AMCLQNEGAI YAC