| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HY04AAS1_0542 |
|---|
| Symbol | |
|---|
| ID | 6743338 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Hydrogenobaculum sp. Y04AAS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011126 |
|---|
| Strand | - |
|---|
| Start bp | 476085 |
|---|
| End bp | 477842 |
|---|
| Gene Length | 1758 bp |
|---|
| Protein Length | 585 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 642750333 |
|---|
| Product | DNA-directed DNA polymerase |
|---|
| Protein accession | YP_002121207 |
|---|
| Protein GI | 195952917 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.00481022 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATTTTG TGTATGTAGA TAAAGAGCCT GTTTTAATAA AAGCTTTAGA CTATCTTTCC
TCTGGTGATA TTTGGTTTAT AGACACAGAA ACCACGCCAA AAGATATAAG ACTTTTTCAA
GTAGGATTAG AGAGCGGTCC TATTTATGTG ATAGACTTTT TGTTTGTAAA AAGAGCTCCA
GAACTTATAA AAGATATAAT AGCTAAAAAG GGTGTAGCAG GACACAACTT AAAATATGAT
TTAAAGTATC TTATGAAATA CGATATACAT CCTTATACTA CGTTTGATAC TATGGTAGGA
GCACAGTTGA TAGGTTTAAA TAGAGTTTCT TTGGCGAGTG TTTACAATCA TTTTACAGGT
GAAAGTATCG ACAAAAAAGA GCAGTTTTCA AATTGGTCTT CAAAAGAGCT TACAGAAAGT
CAAATTTTTT ATGCTGCAAA GGATGTAGAG GTTTTGAGGC TTTTATACGA AAAGCTAAAA
AATGAATTAA ACAAAGAACC CACCATCATT GAGATATTAC AAAAATCAAG GGTGGCGAAG
GTTTTTGGAT TGGAAAGCAC ATACGCTATA ATAGAAATGG GGTTTGTACA GGAGCTTGCT
AAAATTGAAC ACACCGGAAT AGGAATAGAT ACAAAAGAAA TAGAGACTAT GAAAAAACAA
TTACAAAAGA AAACCCAAGA GCTTGCTATG AACTTTTATA TAAAGTATCG TATAGATATA
AGTAGTCCTA AAAAAGTAGG TGAGTTTTTA GAAAATCATT TAAATATTTC ACTTCCTCGT
ACCGATAAAG ACAATATAAT AACAGATGAT AGTGTGTTGA TAGAGCATCT TGACTATGAA
AACGAGAAAG CAAAAGATGT GATAAGTAGC GTATTGGAGT TTAGAAAGCT TCATAAGTTA
CAAGAAAAGC TATCAGAGAT TTTAGAGTAC AACGAAAACA ACCGTATACA TCCAGAGTTT
TGGCAAATAG GAGCCGTTAC TGGAAGGATG TCCTCTTCAA GACCCAATGT TCAAAACATA
CCAAGAGAAT TAAGAAGTAT TCTAAAAGCT AAAGACGGAT ACGTGTTTGT AATAGCTGAT
TTCTCACAAA TAGAACTAAG AATAGCAGCA GAGTATGTTA AAGATGAGGT AATGATAGAT
ATAATAAATA AAGGAGAAGA CCTTCACAAG TTTACAGCCT CATTAATTAC AGGTAAATCG
TTGGAAGATA TTACAAAAGA AGAAAGACAA AGGGCAAAAG CTGCCAATTT CGGTCTTATA
TACGGTATAT CAGAAAAATC TCTTTCTTTG TATGCAAGAA ACTCTTATGG GATTGATATG
TCTATAGAAG AAGCCAAAAG ATTTAGAGAG GTGTTTTTTT CTACATTCCA AGGGATAAAA
GCTTGGCACG AAAGGATAAA AAAAGAGCTA AAGGCAAAAG GTGAAATAAG GTTAAAAACT
ATCGGCGGAA AACCTATGAT AGCCTACACT TTTACCGATG CTGCCAATTA TCCAATACAA
GGTACTGGAG CAGAATTGTT GAAGCTTTCA GTTTTAATTT TTTCTCAAGA GCTTAAAAGA
GCTTTTCCAA GCATATTTCA CGAAGTAGCA AACGTTGTAA ACTTGGTACA CGATGAGATA
GTGGTGGAAG CAAAAGAAGA TTATAAAGAA GAAGTATCTA AGCTTTTAGA AAAATCTATG
AAAAAAGCTG GCTCTATACT TCTTAACAAT GTAAAAATAG AAACAGAAAT AGTTATCAAT
CACCGCTGGA CAAAGTAA
|
|---|
| Protein sequence | MNFVYVDKEP VLIKALDYLS SGDIWFIDTE TTPKDIRLFQ VGLESGPIYV IDFLFVKRAP
ELIKDIIAKK GVAGHNLKYD LKYLMKYDIH PYTTFDTMVG AQLIGLNRVS LASVYNHFTG
ESIDKKEQFS NWSSKELTES QIFYAAKDVE VLRLLYEKLK NELNKEPTII EILQKSRVAK
VFGLESTYAI IEMGFVQELA KIEHTGIGID TKEIETMKKQ LQKKTQELAM NFYIKYRIDI
SSPKKVGEFL ENHLNISLPR TDKDNIITDD SVLIEHLDYE NEKAKDVISS VLEFRKLHKL
QEKLSEILEY NENNRIHPEF WQIGAVTGRM SSSRPNVQNI PRELRSILKA KDGYVFVIAD
FSQIELRIAA EYVKDEVMID IINKGEDLHK FTASLITGKS LEDITKEERQ RAKAANFGLI
YGISEKSLSL YARNSYGIDM SIEEAKRFRE VFFSTFQGIK AWHERIKKEL KAKGEIRLKT
IGGKPMIAYT FTDAANYPIQ GTGAELLKLS VLIFSQELKR AFPSIFHEVA NVVNLVHDEI
VVEAKEDYKE EVSKLLEKSM KKAGSILLNN VKIETEIVIN HRWTK
|
|---|
| |