| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HY04AAS1_0316 |
|---|
| Symbol | |
|---|
| ID | 6743110 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Hydrogenobaculum sp. Y04AAS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011126 |
|---|
| Strand | - |
|---|
| Start bp | 275320 |
|---|
| End bp | 276654 |
|---|
| Gene Length | 1335 bp |
|---|
| Protein Length | 444 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 642750109 |
|---|
| Product | MATE efflux family protein |
|---|
| Protein accession | YP_002120984 |
|---|
| Protein GI | 195952694 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.000262265 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGAAGCAA ACCTTATTGT TGATGAGTCT AAAAAATCAA GAGATATATT AAAGGCGGTG
CTTAATGTCG CCACACCGGT AATTATCTCA AATTTACTTT ACACCGTTGA AACGCTTGTA
TCGCTTCTTT TGGTGTCTCA TCTTGGTAAA AGCGCTATAG CCGGTGTTGG TTATTCGATA
TCCATGATGT GGTTTGTTTA TTCTTTGATG GCTCTAACTT ACAACGGTAC ATCTATTATG
GTGTCCCACA GAGTAGGAGC TGGTAAGCCG TTTTTTGATG TATTTTTAAG CGGTATGGTT
TTATCGCTTT TATTATCAAT ACCAATTGCT CTTTTTGGCA CAAAGTTTAT ACCAGAGCTT
ATGCTTTTGT TTGGGGCTAA AAAAGACATA GCAAACATAG CCACGATATA CTTAAAACCC
ATATTTTTAG CGGCTTTTAT ACAGTTTGCC ACAGAGGTGT TTTACGCTAC ATACAGCGGT
ATGGGTCAAA CAAAATTTCC CTTTAAAGTA TCTGTAATTA TGAATATAAC CAATATAGCA
AGCTCTTATG TCCTTATAAA CGGCAAGCTT GGTTTTAAGG CTTTTGGCAT AGAAGGTGCT
GCTTTTGGTA TTGTGATATC TGAAGTGGTT GGATTTTTTA TTTACGCTTA TGTGCTCTTT
GTTAATAAAC CTTTTGGTAA ACTTTCTTTT AAAAGCCTAA AAACTATTTT AGAGATGTTA
AAACTTGGGA TACCTGTTAC AGTAGATAGG GGTCTTACAA GTTTGTCCTT CAATCTTTTT
GTAGGGTTTG TAGCAAGATT TGGCAATACC ATTTTGGCAG CCTATCAAAT AGGCCTTAGA
TTAGAAAGCA TATCTTTTAT GATAGGTTAT GCTTTAAGTA TATCGGCAAG TGTATTGACT
GGACAAAATT TTGGCGCTGG CAACATAAAA GGAGCTTTTA GAGGAGCTAA GGTAATTGCA
AATTTTAGTG CTTTGGCAAT GGGTATAGTT GGTCTTATGG TGATTATTTT ATCAAAATAT
ATGGCTATGA TATTTACAAG CGATAAAAAC ATAATACACT ATGCCGAAAT ATATCTTATT
ATGGTAGGTT TAACACAGGT GTTTTTGTCT TATAGCTTTG TTTTATCTGG GGCTATAAAA
GGCTTAGGCA AAACTTACAT ACCTATGATT GTCAATATAG TATCGTTTTG GGTTTTTAGA
ATAATACCTA TAGTTGTTAT GTTAAAATAT ATCTTTAATC CATTCGTACC TTGGGTGTTT
ATGAGTGTTG AAACCGTAGC AAGGGCTATT TGTTTTTTGG TAGTATTTAA ATATTTGGAG
AAAAACTATG GATAA
|
|---|
| Protein sequence | MEANLIVDES KKSRDILKAV LNVATPVIIS NLLYTVETLV SLLLVSHLGK SAIAGVGYSI
SMMWFVYSLM ALTYNGTSIM VSHRVGAGKP FFDVFLSGMV LSLLLSIPIA LFGTKFIPEL
MLLFGAKKDI ANIATIYLKP IFLAAFIQFA TEVFYATYSG MGQTKFPFKV SVIMNITNIA
SSYVLINGKL GFKAFGIEGA AFGIVISEVV GFFIYAYVLF VNKPFGKLSF KSLKTILEML
KLGIPVTVDR GLTSLSFNLF VGFVARFGNT ILAAYQIGLR LESISFMIGY ALSISASVLT
GQNFGAGNIK GAFRGAKVIA NFSALAMGIV GLMVIILSKY MAMIFTSDKN IIHYAEIYLI
MVGLTQVFLS YSFVLSGAIK GLGKTYIPMI VNIVSFWVFR IIPIVVMLKY IFNPFVPWVF
MSVETVARAI CFLVVFKYLE KNYG
|
|---|
| |