| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HY04AAS1_0135 |
|---|
| Symbol | |
|---|
| ID | 6742921 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Hydrogenobaculum sp. Y04AAS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011126 |
|---|
| Strand | - |
|---|
| Start bp | 121047 |
|---|
| End bp | 121799 |
|---|
| Gene Length | 753 bp |
|---|
| Protein Length | 250 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 642749922 |
|---|
| Product | polysaccharide deacetylase |
|---|
| Protein accession | YP_002120805 |
|---|
| Protein GI | 195952515 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0000000000210343 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAGAA GAGAATTTTT AAAAAACATT CTTGTAGGTG GAATAGGCTT AGGCATTGGT
AGTGCTTTTG GAAGCACATT GAAGATTACC GCAAAAGAAC AAACAAAATC TACCAATATA
AAACCGCAAA TAGCTTTAAC TATAGACGAC GGGTGGTTTG ATAGAGAAAA AATGGTAAAT
ATAGTAAATC ATTATCAAGT ACCAGCAAAC TTTTTTATCA TAGGAAGAGT TATAGAAGAG
GACCCAAAAC CATGGATAAA CGCTATAGAA AACGGGCATG AATTAGGATG TCACACTTAC
TTTCACAACT TCTTCTCAAA GGAAACTATA TCTAAAATAG ACGAAGACTT TAGCCTATAT
GCAAAAACGT TTATAGACAA GCTTGGAAAC GAAAATTTCA ACAACATAAA GCATTTTAGA
TATCCATACG GAGACGTTGG CAACTATATA AACAAAAAAT ATATCGAATC TCTTATAAAA
GCTCATGGTT GGGATATAGC TTGGTGGGAT TTGGATTTGT CTTTTTATCA TAGACCCCGT
TTTGGTGTTT ATAAAAACCC AATACAACCT TTAGATAAAT TTAAAATTTA TATGGAACAT
ATGGAAGAAT TATCTATGAA ACTTGGTAGG CCAACAAAAA CGAAGGTCTT AATGCACTTC
AAATATCCAG ACGATCTTAC ACTAAAAGAT GTTATAGAGT ATTCTTTGAA ACGAGGCTAT
GAAATAAAGA GATTATCAGA GTTAGAAGCT TAA
|
|---|
| Protein sequence | MERREFLKNI LVGGIGLGIG SAFGSTLKIT AKEQTKSTNI KPQIALTIDD GWFDREKMVN
IVNHYQVPAN FFIIGRVIEE DPKPWINAIE NGHELGCHTY FHNFFSKETI SKIDEDFSLY
AKTFIDKLGN ENFNNIKHFR YPYGDVGNYI NKKYIESLIK AHGWDIAWWD LDLSFYHRPR
FGVYKNPIQP LDKFKIYMEH MEELSMKLGR PTKTKVLMHF KYPDDLTLKD VIEYSLKRGY
EIKRLSELEA
|
|---|
| |