| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HY04AAS1_0078 |
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| Symbol | |
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| ID | 6742861 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Hydrogenobaculum sp. Y04AAS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011126 |
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| Strand | - |
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| Start bp | 70234 |
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| End bp | 72216 |
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| Gene Length | 1983 bp |
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| Protein Length | 660 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 642749862 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_002120748 |
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| Protein GI | 195952458 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 59 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGATTT TAAGAAAAAT AAATTGTTTG AATATATTTT CCGTTTTATG GATTTTTATA
GTGTTTGGAA TGGCCCATGG AAAGGGAAAA ACCAAATACT TAAACAACAT GGTAGTACTA
AACTTCCAAA ACCAAAGCAT AGATGATATA GCAAAGTTTA TGTCAAAGCT TACTGGTAAA
ACTATAGTGA TAGGGATAAA GGGAAATCTT CCTAAAATAA CGGTTAGCTC CAAAAAACCT
GTAAGCGTAG AAGACGCTTG GCATCTTTTT TTAACGAGCT TAGCTTTAGA TGGGTACACT
GTTGTAAAAT ATAAAAACTT TTACAAGATA CTTCCTCTAA AAGAAGCATC TTCTTTTAGC
ACAAGTGTTA CAAAAAAAGC CTTTCCAAGC CCCTCTATAG AAACCTACAT TTACTTTGCC
CATACAAACT CCCAAATACT TCTAAATGCC GTAAGACCTT TTTTAAGCCA ATATGGTAAC
GCCACCGTTT ATATGCCCTC AAACGCCCTT ATCATATCTG ATATAGGAGT GTCTGTTGAT
AAAATCCAAA AACTTTTAAA GAGTATAGAT ATACCAAATT TAGCTTTTAG TCTAAAAATG
TATCAAACAA AAGATACAAA CGCCGTTGTA AAAGCCCTAA GCCCCTTGGC AAACCCTGTA
AGTCAAAAGT TTGGTATACC TATGGTGGTA TCTTCTGTTC AGAAAAAACA CTCCAAAAGC
GGTTTTGTGC TTGTATATGC ACCGAAGCTT ATGCAAGCCT CTATAAAAGA GATTATACAT
AAAATAAACG AAAGCGCCTC TCATTTTAGA AGACATTATT ATGTTATCCC ACTTCAAAAC
GCCTCTGTAG GAGAAATGGC AAAGACGTTG GCAAGCCTTT TTGGAAGCGC AAGCGCCATT
TCCTCTACCA CAAAAAGACC TACACCAAAC CTAAACACTA TGCAAAACCA ACCTCAAACA
ATTCAAAGCA ACGTACCTCC AAATCAAAAC ATAAACGTAA TATCTTCCAA CAAACCAATA
GGCTCTATAT ATCTTTCTGA TGGCACGAGG ATAGGTTTTG ACAGAGCCAC AAACAGCGTT
ATTTTATACG CCACAAAATC TCAATACGAA AATCTAAAAA ATCTCATAAA AAAACTAGAC
GAAAAACGCA TTCAAGTGCT GATAGCGGCT TCTGTAGTGG AGGCAAACCT CACCAAACAA
CTTACCACCG GTGTAAATTG GCAAGCTTTG GGCAAAAATG GCGGTATAGG ATTTAACCCG
GCATCTCTTC AAACCATATA CCAAGGGCTT TTATCTGGAA ACTTCGTAGT AGGTGTTACA
AGCTCAAGCA GTATAAGTGC AAACGTAGGT GGTAATACAA TCATATTTCC TGATTTAGCG
GTATTTTTAA GTTTGTTAGA GCAAGGAAAT GGTTTTAAAA TCATATCAAA CCCAAAGGTG
CTAACCCTTG ACAACGAAGA GGCTATTATA AAAGAAGCTC AAGTTTATCC TTATGTAACA
GGTACCCAAT ACAACATAAA CGGCTTCCCA ATACTCACTT ACGACTACAA AGATATAGGC
CTAGAGCTTG ATGTTATACC TACTGTTTCA AAAGACAACA TAAGGCTTGG CATAAACTTA
AATCTTCAAG ATATCACGGG CTTTACAAAT ACAAACGTAG CGGGTCAAAC GGTGCCTATA
CCTATTACCA CAGATAGAGT TTTAAATTCG GAAGTAGTCG TTAAAAGCGG TCAAACGGTG
ATATTAGGAG GACTCGTGAG CAACAACACT ATAAAAAACA TAAGCGGTAT ACCAATTCTT
CAAGATATCC CAGTTTTAGG AAATCTCTTC AAATATCAAA ACAGAGAAAA TAAAAAAAGC
ACTCTTTTTA TATTTATAAC ACCTTACATC ATAAAAAGCC CAGATCAACT TGCCAAAATT
ACGAAAGCAA ATGAAGTAAT AGCGCACAGA ATATACGAAA GTGTGAAAAA AGCAAAAGAA
TAA
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| Protein sequence | MKILRKINCL NIFSVLWIFI VFGMAHGKGK TKYLNNMVVL NFQNQSIDDI AKFMSKLTGK
TIVIGIKGNL PKITVSSKKP VSVEDAWHLF LTSLALDGYT VVKYKNFYKI LPLKEASSFS
TSVTKKAFPS PSIETYIYFA HTNSQILLNA VRPFLSQYGN ATVYMPSNAL IISDIGVSVD
KIQKLLKSID IPNLAFSLKM YQTKDTNAVV KALSPLANPV SQKFGIPMVV SSVQKKHSKS
GFVLVYAPKL MQASIKEIIH KINESASHFR RHYYVIPLQN ASVGEMAKTL ASLFGSASAI
SSTTKRPTPN LNTMQNQPQT IQSNVPPNQN INVISSNKPI GSIYLSDGTR IGFDRATNSV
ILYATKSQYE NLKNLIKKLD EKRIQVLIAA SVVEANLTKQ LTTGVNWQAL GKNGGIGFNP
ASLQTIYQGL LSGNFVVGVT SSSSISANVG GNTIIFPDLA VFLSLLEQGN GFKIISNPKV
LTLDNEEAII KEAQVYPYVT GTQYNINGFP ILTYDYKDIG LELDVIPTVS KDNIRLGINL
NLQDITGFTN TNVAGQTVPI PITTDRVLNS EVVVKSGQTV ILGGLVSNNT IKNISGIPIL
QDIPVLGNLF KYQNRENKKS TLFIFITPYI IKSPDQLAKI TKANEVIAHR IYESVKKAKE
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