Gene SeHA_C3828 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeHA_C3828 
Symbol 
ID6489931 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Heidelberg str. SL476 
KingdomBacteria 
Replicon accessionNC_011083 
Strand- 
Start bp3696528 
End bp3698081 
Gene Length1554 bp 
Protein Length517 aa 
Translation table11 
GC content60% 
IMG OID642743939 
Product60-kDa SS-A/Ro ribonucleoprotein 
Protein accessionYP_002047545 
Protein GI194450086 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones6 
Plasmid unclonability p-value0.65682 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones68 
Fosmid unclonability p-value0.624732 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTAATC CACTTTTGTT CCGTTCGCTG TTAAGGGACG CGCCGCTGGC CAACGCCAGC 
AATCAGCAAG GCGCAGCGGC CTTTGCCTTC ACCCCGCGCC ATAAACTGGC GCAAATGGTG 
ATGACCGGCT GCATGAACGA GACTTTTTAT GCCAGCGGCC AGGCGCAGCT AAATGATGTT 
CTGGCGACGG CGAAAGATCT CGACGATCTG TTTTTAGCGC AACTGGCGAT TTATGGCCGC 
GAACGCGGGA TGATGAAGGA TATGCCCGCG CTGTTGACCG CCATTCTGGC GGCGCGTGGT 
TCGGCGCTGC TGCCGGTAGT ATTTACGCGG GTGATCAACA ATGGCCGGAT GCTGCGTAAC 
TTTGTGCAAA TGTTGCGCAG CGGCGTGACC GGGCGGCGCT CGCTGGGGAC GCGGCCAAAG 
AAGCTGGTGC AGCGTTGGTT GCAGAACGCC AGCGAAGAGC GCTTATTGCA GGCATCGGTG 
GGCAATGCGC CGTCGCTGGC GGATATCGTC AAAATGGTGC ACCCACGGCC GCAGGCGGCG 
TGGCAGGAAG CCTTCTTCGC CTGGCTGATT GGTAAGCCGT GCGATAAGGC GCAGCTGCCG 
GAAAAAACGC GCGCGCTGCT GGCGTTTCGT GAAGGCGACA TGGGCGCGGC CTTACCCGAT 
GTGTCGTTTT TACTACTGAC CAACGCGCCG CTGAGTCGCG AACAGTGGGC GCAACTGGCG 
CAGCGGATGA GTTGGCAAAC GTTACGGATG AATTTGAATA CGCTGGCGCG TCATGACGTG 
TTTGAGAATG CAACGCTTGC CGCCAGCGTG GCGCAGCGGC TGGCGGACAG GGCGCAGGTG 
CGCCAGTCCT GGGTTTATCC TTATCAGTTG CTGTCGGCGT GGAGCAATCT GCAAAGCGGC 
GTGCCGCAGG TTATTCGCGA GGCTTTAGCG CAGGCGATGG AGTACGCGCT GGAGAACATT 
CCGCCGTTTC GCGGCAATGT GGTGGTCTGC CCGGACGTGT CGGGGTCGAT GAAGTCGTCG 
ATAACCGGCT ATCGCAAGGG GGCGACCAGT AAGATCCGCT GCGTGGACGT TGCCGGGCTG 
ATCGCCGCCG CCGTGCTGCG TAATCATCCG CAGGCCCGCG TGCTGCCGTT TGAATGCGAT 
GTGGTCGACG TGCGGCTTGA TGCGCGCCAG TCGGTCATGC ACAACGCGCA AAAGCTGGCG 
GCGGTTGGCG GCGGCGGCAC CAACTGCTCC GCGCCGCTGC GTAGGTTGTT GAACGAGCGG 
GCGCGGGTGG ATCTGGTGAT TATGGTGTCG GATAACGAAT CGTGGGTTGA TAAATCGCGC 
CATGGCTCAA CGGCCACCAT GGAATGCTGG ATCGAACTGA AAAAGCGCAA CCCGCAGGCG 
CGCCTGGTGT GTATCGATCT GCTGCCTTAC GGCACCACCC AGGCGGCGGA ACGAAGCGAT 
ATTTTGAACG TCGGCGGCTT CAGCGACGAG GTGTTTACGG TGATAGATAA CTTTGTTAAC 
GGTCACTATG GCAGCGCGCA CTGGCTGGAA GAGATTGAAG CCGTGACGTT GTAA
 
Protein sequence
MANPLLFRSL LRDAPLANAS NQQGAAAFAF TPRHKLAQMV MTGCMNETFY ASGQAQLNDV 
LATAKDLDDL FLAQLAIYGR ERGMMKDMPA LLTAILAARG SALLPVVFTR VINNGRMLRN 
FVQMLRSGVT GRRSLGTRPK KLVQRWLQNA SEERLLQASV GNAPSLADIV KMVHPRPQAA 
WQEAFFAWLI GKPCDKAQLP EKTRALLAFR EGDMGAALPD VSFLLLTNAP LSREQWAQLA 
QRMSWQTLRM NLNTLARHDV FENATLAASV AQRLADRAQV RQSWVYPYQL LSAWSNLQSG 
VPQVIREALA QAMEYALENI PPFRGNVVVC PDVSGSMKSS ITGYRKGATS KIRCVDVAGL 
IAAAVLRNHP QARVLPFECD VVDVRLDARQ SVMHNAQKLA AVGGGGTNCS APLRRLLNER 
ARVDLVIMVS DNESWVDKSR HGSTATMECW IELKKRNPQA RLVCIDLLPY GTTQAAERSD 
ILNVGGFSDE VFTVIDNFVN GHYGSAHWLE EIEAVTL