Gene SNSL254_A3345 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A3345 
Symbol 
ID6482998 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand- 
Start bp3248460 
End bp3249146 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content57% 
IMG OID642738636 
Productregulatory protein IclR 
Protein accessionYP_002042357 
Protein GI194444335 
COG category[K] Transcription 
COG ID[COG1414] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones7 
Plasmid unclonability p-value0.20582 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones61 
Fosmid unclonability p-value0.338935 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCATCAC AACCGAATCA AAGCCTGATA GATGGCATTC GCTGTCTGCA ATATCTGGTT 
TCCAGCGACC GTGCTATCGG ATGTCGCGAG CTTGCCCGGC TGATGGATAT TAATACCACG 
CGCGTTAATC GCCTGTTAAT GACGATGGCC TCTATTGGAC TCACGATGCA GGATGAGCAC 
CGACGCTATT TACCCGGGCC AGGCATTCAT GCTTTGGCGG CGCAGGCGAT TCGTGGTTCA 
GCGCTGTTCT CCCATGCGTT GCCTATCCTT GAACGCCATG CGCCCAAAGA CATCGTGGTG 
GCATTAGGCG TGCTATGGGA AGACCAGATT ATCTATATTT ATCACTCTGC GCCGGGTTCG 
CAGGGAAGTC AGGCGCTGGC GGGGTTTCGC ATGTCCCCGG CCTGGCAGTC GGTAACAGGA 
GTGGCGTTAC TGGCGGCAGA AAGCGATGAG GCGCTAATGC AGCGTTTTAG TCCGGAGCAG 
TGGCGTAATC TGGCACCGCA TGTGGCGCAG CAGCGCCAGC GGGGATACGT GCTGTGGCAT 
CACGCTGATG GTGAAGTTTC TATGGCGCAA CCGCTAGACA AGCACGCCGC AGCGCTGGCC 
TTTGCGGGAA TGTGGCGGAT TGATGAGGCG GAGGCGGCTG CGCGTTTACA GGCGCTGAAG 
GCACTAAACC AGCTTATTGC CCAGTAA
 
Protein sequence
MSSQPNQSLI DGIRCLQYLV SSDRAIGCRE LARLMDINTT RVNRLLMTMA SIGLTMQDEH 
RRYLPGPGIH ALAAQAIRGS ALFSHALPIL ERHAPKDIVV ALGVLWEDQI IYIYHSAPGS 
QGSQALAGFR MSPAWQSVTG VALLAAESDE ALMQRFSPEQ WRNLAPHVAQ QRQRGYVLWH 
HADGEVSMAQ PLDKHAAALA FAGMWRIDEA EAAARLQALK ALNQLIAQ