Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A2339 |
Symbol | |
ID | 6484387 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | - |
Start bp | 2255061 |
End bp | 2257547 |
Gene Length | 2487 bp |
Protein Length | 828 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 642737679 |
Product | fimbrial usher protein |
Protein accession | YP_002041421 |
Protein GI | 194443875 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3188] P pilus assembly protein, porin PapC |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.365526 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 69 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAAAGT TAAACGCCAT CACGCTGTCA CTTTTTGCAG CATTACTTAT TTCACCCGCC TGGGCTGAAG AAGAAATATT CGATACTAAC TTTATGTTCG GTGGGTTGAA AGGTGAAAAG GTGTCTCGTT ATCAGATTGA TAGCACCAAA CCCATGGCTG GCGTTTATGA AATGGACGTT TATGTCAATA AAGAATGGCG TGGAACTTAT GAGGTTAATA TTCAGGATGA CCCCGATAGC ACCTGTATTT CTCCGGACCT GATCGCCAGC CTGGGAATTA AATTTACCCC GCAGAGTACA ACAGTAGAAA ATGAATGTAT TGCGCTGAAA ACGGTGGTCC ATGGAGGTAG CGTTTCTTAT GACACTGCCG CATTTAACCT TTATCTGAGC GTCCCTCAGG CTTATGTGCT GGAATATGAA GCGGGCTATG CGTCTCCAGA GACATGGGAC CGCGGGATTA ACGCTTTTTA TACTTCCTAC TATGCTAGTG AATATTACAG CCATTATAAA AGTGGTGGTA GTGAGAAAAA TACTTACGCA AATTTTGTCA GCGGGTTGAA TCTGCTTGGA TGGCAATTAC ATTCTAATGC TAACTTTTCC AAAAGTGAAA ACTCAGCTGG TAAATGGCAG AGCAATACTC TGTATCTGGA ACGTGATTTC CCGGCGGTAC TGGGGACAAT GCGTCTGGGG GAACAGTACA CCAGCGGGGA TATGTTTGAT ACGGTGCGCT TTCGCGGGGT GCGCTTCTGG CGTGATATGC AAATGCTGCC GCACTCTAAG CAAAATTTCG CTCCGGTTGT GCGTGGCGTG GCGCAAAGTA ACGCCCTGGT GACGGTTGAA CAGAATGGCT TCATTGTTTA TCAAAAAGAA GTTCCGCCTG GCCCCTTTGT ATTTGAAGAT CTTCAGCTGG CAGGGGGGGG AGCCGATCTG GACGTGAGCG TTAAAGAGGC TGACGGTACT GTTTCACGGT TTATTGTTCC GTATTCTTCC GTTCCCAATA TGGTGCAGCC CGGCGTAGCA AAATATGATT TCGCCGCCGG ACGAAGCAGA ATTGAAGGAG CCTCTCAGCA AACTGATTTT CTCCAGGGAA CCTATCAGTA CGGGGTCAAT AACCTGCTAA CGTTGTATGG CGGAACGATG TTAGCCAGCG ATTATCGCTC ATTTACCCTT GGCACCGGAT GGAACACGCT GATTGGCGCG GTATCTGTCG ACGGTACGTT GTCTCATAGC AAGCAGGATA ATGGCGATGT TTTTGATGGG GAAAGCTACC AGGTTGCCTG GAATAAATAT CTCCCGCAAT CGGCCACCCA TTTTTCTCTG GCAGCGTATC GCTACTCATC ACGTGATTAT CGCACTTTTA ACGATCATGT CTGGGCTAAT AACCGGGATA ACTATCGTCG CGATGATGAC GATATTTATG ATATTGCTGA TTATTATGAG AATGACTTTG GGCGTAAAAA TACTTTCACT CTCAATATTA ATCAGACGTT ACCCGATGGG TGGGGATATT TTACTGCCAG CGCTCTGTGG CGCGACTATT GGGGGCGTAG CGGCACGGGA AAGGATTATC AGTTAAGCTA CAGTAATACC TGGCAGCGGC TCAGTTTTAC GCTATCGGCA ACTCAGACGT ATGACAGCAA TAACCGTGAA GATAAGCGCT TTAATATCTA TTTATCGATT CCCTTAACAT GGGGATTAAA GGAGAATGGG GGAAATCGTG ATATCCATTT ATCGAATTCT ACCACCTTTG ACGATCAAGG TTATGAGGCG AATAACACCA GCCTTAGCGG CACGTTCGGT AATCGCGATC AGTTTAATTA TACGACTAAC CTCAGCCAGC AGCGACAGGA ACACCAAACG ACATTCGGGG GATCGGTAAC CTGGAACGCC CCGCTGGCGA CAGTCGGCGG CAGTTACAGC CAGTCCAATA AATACCATCA GGTGGGCGGA AATATTCAGG GAGGGCTGGT TGCATGGGCC GATGGCGTGC ATTTAGCCTC TCGCCTTAAT GATACTATCG CGATTATTAA CGCGCCGTAC CTGGAAGGCG CGGCGGTGCA GGGGCGTCCC TATTTACGTA CCAATGCAAA AGGTTATGCC GTATTTGAAG CATTGACGCC ATACCGGCAA AATTTTATCT CTCTTGATGT CTCTGAGAGT GAAAGCGATG TCGCCCTGTT GGGAAATCGA AAAGTTACAG TGCCTTATCG CGGAGCCGTA GTATTGGTTC ATTTTGAAAC AGAGACCAGT AAACCTTTTT ATTTCCTGGC GCGGCGCGCA GATGGCGAGC CTTTAACATT TGGTTATGAA GTGGAAGATG ACGAGGGAAA TAATGTAGGA CTGGTAGGTC AGGGGAGCCG GGTATTTATT CGTACTGAAA AGGTTCCCAT TTCGGTAAAA ATCGCAACAG ATAAACAACA GGGTCTTTTC TGTAAGATCA CTTTTGATAA ACAGATTGAT GAAAATAACG TTTATATTTG TCGGTAA
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Protein sequence | MEKLNAITLS LFAALLISPA WAEEEIFDTN FMFGGLKGEK VSRYQIDSTK PMAGVYEMDV YVNKEWRGTY EVNIQDDPDS TCISPDLIAS LGIKFTPQST TVENECIALK TVVHGGSVSY DTAAFNLYLS VPQAYVLEYE AGYASPETWD RGINAFYTSY YASEYYSHYK SGGSEKNTYA NFVSGLNLLG WQLHSNANFS KSENSAGKWQ SNTLYLERDF PAVLGTMRLG EQYTSGDMFD TVRFRGVRFW RDMQMLPHSK QNFAPVVRGV AQSNALVTVE QNGFIVYQKE VPPGPFVFED LQLAGGGADL DVSVKEADGT VSRFIVPYSS VPNMVQPGVA KYDFAAGRSR IEGASQQTDF LQGTYQYGVN NLLTLYGGTM LASDYRSFTL GTGWNTLIGA VSVDGTLSHS KQDNGDVFDG ESYQVAWNKY LPQSATHFSL AAYRYSSRDY RTFNDHVWAN NRDNYRRDDD DIYDIADYYE NDFGRKNTFT LNINQTLPDG WGYFTASALW RDYWGRSGTG KDYQLSYSNT WQRLSFTLSA TQTYDSNNRE DKRFNIYLSI PLTWGLKENG GNRDIHLSNS TTFDDQGYEA NNTSLSGTFG NRDQFNYTTN LSQQRQEHQT TFGGSVTWNA PLATVGGSYS QSNKYHQVGG NIQGGLVAWA DGVHLASRLN DTIAIINAPY LEGAAVQGRP YLRTNAKGYA VFEALTPYRQ NFISLDVSES ESDVALLGNR KVTVPYRGAV VLVHFETETS KPFYFLARRA DGEPLTFGYE VEDDEGNNVG LVGQGSRVFI RTEKVPISVK IATDKQQGLF CKITFDKQID ENNVYICR
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