Gene SNSL254_A2243 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A2243 
Symbol 
ID6486755 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand
Start bp2150249 
End bp2152597 
Gene Length2349 bp 
Protein Length782 aa 
Translation table11 
GC content48% 
IMG OID642737591 
Productsecreted effector protein 
Protein accessionYP_002041333 
Protein GI194444317 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones55 
Fosmid unclonability p-value0.209419 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGATAT CATCAGGCGC AATTAATTTT TCTACTATTC CTAACCAGGT TAAAAAATTA 
ATTACCTCTA TTCGTGAACA TACGAAAAAC GGGCTCACCT CAAAAATAAC CAGTGTTAAA
AACACGCATA CATCTTTAAA TGAAAAATTT AAAACAGGAA AGGACTCACC GATTGAGTTC
GCGTTACCAC AAAAAATAAA AGACTTCTTT CAGCCGAAAG ATAAAAACAC CTTAAACAAA
ACATTGATTA CTGTTAAAAA TATTAAAGAT ACAAATAATG CAGGCAAGAA AAATATTTCA
GCAGAAGATG TCTCAAAAAT GAATGCAGCA TTCATGCGTA AGCATATTGC AAATCAAACA
TGTGATTATA ATTACAGAAT GACAGGTGCG GCCCCGCTCC CCGGTGGAGT CTCTGTATCA
GCCAATAACA GGCCTACGGT TTCTGAAGGT AGAACACCAC CAGTATCCCC CTCCCTCTCA
CTTCAGGCTA CGTCTTCCCC GTCATCACCT GCCGACTGGG CTAAGAAACT CACGGATGCA
GTTTTACGAC AGAAAGCCGG AGAAACCCTT ACGGCCGCAG ATCGCGATTT TTCAAACGCA
GATTTCCGTA ATATTACATT CAGCAAAATA TTTCCCCCCA GCTTCATGGA GCGAGACGGC
GATATTATTA AGGGGTTCAA CTTTTCAAAT TCAAAATTTA CTTATTCTGA TATATCTCAT
TTACATTTTG ACGAATGCCG ATTCACTTAC TCGACACTGA GTGATGTAGT CTGCAGTAAT
ACGAAATTTA GTAATTCAGA CATGAATGAA GTGGTTTTAC AGTATTCAAT TACTACACAA
CAACAGCCCT CTTTTATTGA TACAACATTA AAAAATACGC TTATACGTCA CAAAGCCAAC
CTCTCTGGCG TTATTTTAAA TGAACCGGAT AATTCATCAC CTCCGTCAGT GTCAGGGGGC
GGAAATTTTA TTCGTCTAGG TGATATCTGG CTGCAAATGC CACTCCTTTG GACTGAGAAC
GCTGTGGATG GATTTTTAAA TCATGAGCAC AATAATGGTA AAAGTATTCT GATGACCATT
GACAGCCTGC CCGATAAATA CAGTCAGGAA AAAGTCCAGG CAATGGAAAA CCTGGTTAAG
TCATTGCGGG GTGGCCGCTT AACAGAGGCA TGTATCCGGC CAGTTGAAAG TTCGCTGGTA
AGCGTACTGG CCCACCCCCC CTATACGCAA AGTGCGCTTA TCAGCGAGTG GCTCGGGCCT
GTTCAGGAAC GTTTTTTTGC CCACCAGTGC CAGACCTATA ATGACGTTCC CCTGCCGGCT
CCTGACACAT ATTATCAGCA GCGCATACTG CCTGTGTTGC TGGATTCGTT TGACAGGAAC
AGCGCCGCCA TGACCACTCA CAGCGGACTC TTTAATCAGG TGATTTTACA CTGTATGACA
GGCGTGGACT GCACTGATGG CACCCGCCAG AAAGCTGCAG CGCTTTATGA ACAGTATCTT
GCGCACCCGG CGGTGTCTCC CCACATCCAT AATGGACTCT TCGGCAATTA TGACGGCAGC
CCGGACTGGA CAACCCGCGC CGCAGATAAT TTCCTGCTGC TTTCCTCCCA GGATTCAGAC
ACGGCGATGA TGCTCTCCAC TGACACGCTG TTAACAATGC TAAACCCTAC TCCTGACACT
GCATGGGACA ACTTTTACCT GCTGCGAGCC GGAGAGAACG TTTCCACCGC GCAAATCTCT
CCGGTAGAGT TATTCCGTCA TGACTTTCCG GTGTTTCTCG CCGCATTTAA TCAGCAGGCC
GTGCAGCGAC GCTTTGGGGA GCTGATTGAT ATCATCCTCA GCACTGAAGA GCACGGGGAG
CTGAACCAGC AGTTTCTTGC CGCCACGAAC CAGAAACATT CCACCGTGAA GTTGATTGAT
GATGCCTCAG TGTCGCGTCT GGCCACCATT TTTGACCCCT TGCTTCCTGA AGGCAAACTC
AGCCCGGCAC ACTACCAGCA CATCCTCAGT GCTTATCACC TGACGGACGC CACCCCACAG
AAGCAGGCGG AAACCCTGTT CTGTCTCAGT ACCGCATTCG CACGCTATTC CTCCAGCGCC
ATTTTCGGCA CTGAGCATGA CTCTCCGCCG GCCCTGAGAG GCTATGCGGA GGCGCTGATG
CAGAAAGCCT GGGAGCTGTC TCCGGCGATC TTCCCGTCCA GCGAACAGTT TACCGACTGG
TCCGACCGTT TTCACGGCCT CCATGGCGCC TTTACCTGTA CCAGCGTTGT GGCGGATAGT
ATGCAACGTC ATGCCAGAAA ATATTTCCCG AGTGTTCTGT CATCCATCCT GCCACTGGCC
TGGGCCTAG
 
Protein sequence
MKISSGAINF STIPNQVKKL ITSIREHTKN GLTSKITSVK NTHTSLNEKF KTGKDSPIEF 
ALPQKIKDFF QPKDKNTLNK TLITVKNIKD TNNAGKKNIS AEDVSKMNAA FMRKHIANQT
CDYNYRMTGA APLPGGVSVS ANNRPTVSEG RTPPVSPSLS LQATSSPSSP ADWAKKLTDA
VLRQKAGETL TAADRDFSNA DFRNITFSKI FPPSFMERDG DIIKGFNFSN SKFTYSDISH
LHFDECRFTY STLSDVVCSN TKFSNSDMNE VVLQYSITTQ QQPSFIDTTL KNTLIRHKAN
LSGVILNEPD NSSPPSVSGG GNFIRLGDIW LQMPLLWTEN AVDGFLNHEH NNGKSILMTI
DSLPDKYSQE KVQAMENLVK SLRGGRLTEA CIRPVESSLV SVLAHPPYTQ SALISEWLGP
VQERFFAHQC QTYNDVPLPA PDTYYQQRIL PVLLDSFDRN SAAMTTHSGL FNQVILHCMT
GVDCTDGTRQ KAAALYEQYL AHPAVSPHIH NGLFGNYDGS PDWTTRAADN FLLLSSQDSD
TAMMLSTDTL LTMLNPTPDT AWDNFYLLRA GENVSTAQIS PVELFRHDFP VFLAAFNQQA
VQRRFGELID IILSTEEHGE LNQQFLAATN QKHSTVKLID DASVSRLATI FDPLLPEGKL
SPAHYQHILS AYHLTDATPQ KQAETLFCLS TAFARYSSSA IFGTEHDSPP ALRGYAEALM
QKAWELSPAI FPSSEQFTDW SDRFHGLHGA FTCTSVVADS MQRHARKYFP SVLSSILPLA
WA