Gene SNSL254_A0879 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A0879 
Symbol 
ID6485396 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand
Start bp885156 
End bp886286 
Gene Length1131 bp 
Protein Length376 aa 
Translation table11 
GC content54% 
IMG OID642736291 
Productinner membrane transport permease YbhS 
Protein accessionYP_002040051 
Protein GI194444906 
COG category[V] Defense mechanisms 
COG ID[COG0842] ABC-type multidrug transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.585114 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones78 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTAAGT CTCTCTCCTG GCGCCGCGTG CGTGCGTTGT GCGTCAAAGA GACGCGCCAG 
ATCGTGCGCG ATCCCAGTAG CTGGCTGATT GCGGTGGTGA TCCCGCTGCT GTTGCTGTTT
ATTTTTGGTT ACGGCATTAA CCTCGACTCC AGCAAACTGC GGGTGGGGAT TCTGCTTGAA
CAACAAAGCC AGGAGGCGCT GGATTTCACT CATGCGATGA CCGGTTCACC CTATATCGAC
GCGACCATTA GCGATAACCG CCATGAATTA ATTGAAAAAA TGCAGGCCGG ACGCATTCGC
GGACTGGTGG TGATTCCGGT GGATTTCGCG CAGCAAATGG CGCGCGACGG TGACAGCGCG
CCGATTCAGG TGATTACCGA CGGCAGCGAG CCAAACACCG CCAACTTCGT TCAGGGTTAT
GTGGAAGGCA TCTGGCAAAT CTGGCAACAG CAGCGGGCGG AAGATCGCGG CGACACCTTT
GAACCGCTCA TCGACGTCCA GACGCGCTAC TGGTTTAACC CGGCGGCGAT CAGTCAGCAT
TTTATTATTC CCGGGGCGGT GACCATTATC ATGACGGTAA TTGGCGCAAT CCTCACCTCG
CTGGTCGTTG CCCGCGAATG GGAACGCGGC ACGATGGAGG CGCTGCTCTC AACCGAAGTG
ACGCGTGTTG AACTGCTGCT GTGTAAGCTT ATTCCCTATT ACTTTCTCGG TATGCTGGCG
ATGCTGCTCT GTATGCTGGT ATCGGTGTTT ATTCTCGGCG TGCCGTATCG CGGTTCGCTG
GTGATTCTGT TTATCATCAC CAGTCTGTTT TTACTGAGTA CGCTGGGGAT GGGGCTGTTG
ATTTCCACTA TCACTCGCAA CCAGTTTAAC GCCGCGCAGG TGGCGCTGAA CGCCGCGTTT
TTGCCCTCGA TTATGCTGTC CGGATTTATC TTCCAGATAG ACAGTATGCC TGCGGTGATC
CGCGCGGTGA CCTATATTAT TCCGGCGCGC TATTTTGTCA GCACCCTACA AAGTCTGTTT
CTGGCCGGCA ATATTCCGGT CGTGTTAGGC GTTAACGTAC TGTTTTTAAT CGCCTCGGCG
GTGATGTTTA TTGGCCTGAC GTGGCTAAAA ACCAAACGAC GGCTGGATTA A
 
Protein sequence
MSKSLSWRRV RALCVKETRQ IVRDPSSWLI AVVIPLLLLF IFGYGINLDS SKLRVGILLE 
QQSQEALDFT HAMTGSPYID ATISDNRHEL IEKMQAGRIR GLVVIPVDFA QQMARDGDSA
PIQVITDGSE PNTANFVQGY VEGIWQIWQQ QRAEDRGDTF EPLIDVQTRY WFNPAAISQH
FIIPGAVTII MTVIGAILTS LVVAREWERG TMEALLSTEV TRVELLLCKL IPYYFLGMLA
MLLCMLVSVF ILGVPYRGSL VILFIITSLF LLSTLGMGLL ISTITRNQFN AAQVALNAAF
LPSIMLSGFI FQIDSMPAVI RAVTYIIPAR YFVSTLQSLF LAGNIPVVLG VNVLFLIASA
VMFIGLTWLK TKRRLD