Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A0407 |
Symbol | prpR |
ID | 6483472 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | - |
Start bp | 420544 |
End bp | 422169 |
Gene Length | 1626 bp |
Protein Length | 541 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 642735831 |
Product | propionate catabolism operon regulatory protein PrpR |
Protein accession | YP_002039605 |
Protein GI | 194442843 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG1221] Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain |
TIGRFAM ID | [TIGR02329] propionate catabolism operon regulatory protein PrpR |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.00000000136332 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACGACTG CTCACAGCGC TCCGCGCGAT AATAGCGATA AACCGGTGAT CTGGACGGTC TCCGTAACGC GTCTGTTCGA ACTGTTTCGG GATATCAGCC TGGAATTCGA TCATCTGGCG ACCATCACGC CTATTCAACT CGGCTTTGAA AAGGCGGTGA CCTACATTCG CAAAAAACTG GCGACCGAGC GCTGCGACGC GATTATCGCG GCGGGTTCGA ATGGGGCCTA TTTAAAAAGT CGCCTGTCAA TACCGGTGAT CCTCATCAAG CCCAGCGGAT TCGATGTATT ACAGGCGCTG GCGAAAGCGG GAAAGCTCAC CTCGTCTATC GGTATCGTGA CCTATCAGGA GACCATTCCG GCTTTACTTG CCTTTCAGAA AACGTTTCAC CTCCGTCTTG AACAGCGAAG CTATGTCACC GAAGAGGACG CGCGCGGGCA AATTAACGAA CTTAAGGCCA ACGGTATTGA AGCCGTCGTC GGCGCGGGAT TAATTACCGA TCTGGCGGAA GAAGCGGGAA TGACCGCCAT CTTTATTTAT TCCGCGGCGA CCGTTCGTCA GGCTTTCCAT GATGCGCTGG ATATGACCCG TCTGACACGG CGACAGCGCG TGGATTACTC ATCCGGCAAG GGATTACAAA CCCGGTATGA ACTGGGCGAT ATACGCGGCC AGTCGCCGCA AATGGAGCAG CTCCGCCAGA CGATTACGCT CTATGCCCGC TCCCGTGCGG CAGTGCTGAT TCAGGGGGAA ACAGGGACCG GAAAAGAGCT GGCGGCGCAG GCGATTCACC AGACGTTCTT TCACCGCCAG CCTCACCGTC AGAATAAGCC ATCCCCTCCC TTTGTCGCCG TCAATTGCGG CGCGATTACC GAGTCGTTGC TGGAAGCGGA ACTGTTTGGT TATGAAGAGG GCGCGTTTAC CGGTTCACGA CGAGGAGGCC GGGCGGGGCT GTTTGAAATC GCACACGGCG GCACGCTGTT TCTGGATGAA ATCGGCGAAA TGCCCTTGCC GTTACAAACC CGACTCTTGC GCGTACTGGA GGAAAAAGCC GTCACTCGCG TTGGCGGACA CCAGCCGATC CCGGTGGAGG TCCGGGTGAT CAGCGCTACG CATTGCGATC TGGATCGGGA AATAATGCAA GGACGTTTTC GCCCCGATCT CTTTTATCGC CTGAGTATTC TGCGTCTGAC GCTTCCTCCT TTGCGCGAGC GGCAGGCTGA TATTTTGCCG CTGGCGGAAA GCTTTTTAAA ACAGTCGCTG GCAGCGATGG AAATTCCGTT TACCGAATCG ATACGTCATG GATTGACACA GTGTCAGCCG CTTTTGCTGG CCTGGCGCTG GCCCGGTAAT ATTCGCGAAC TGCGTAATAT GATGGAGCGC CTGGCGCTTT TTTTAAGCGT CGATCCCGCG CCAACGCTGG ACAGGCAATT TATGCGGCAG TTATTACCTG AGCTTATGGT GAACACAGCA GAGCTGACGC CTTCAACCGT GGATGCGCAC ACGTTACAGG ATGTACTGGC GCGCTTTAAG GGCGATAAGA CCGCGGCGGC GCGTTATCTG GGGATTAGCC GCACCACTCT GTGGCGTCGT TTAAAAGCAG GAGCCAAAGA CCAGTCGGAT AATTAA
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Protein sequence | MTTAHSAPRD NSDKPVIWTV SVTRLFELFR DISLEFDHLA TITPIQLGFE KAVTYIRKKL ATERCDAIIA AGSNGAYLKS RLSIPVILIK PSGFDVLQAL AKAGKLTSSI GIVTYQETIP ALLAFQKTFH LRLEQRSYVT EEDARGQINE LKANGIEAVV GAGLITDLAE EAGMTAIFIY SAATVRQAFH DALDMTRLTR RQRVDYSSGK GLQTRYELGD IRGQSPQMEQ LRQTITLYAR SRAAVLIQGE TGTGKELAAQ AIHQTFFHRQ PHRQNKPSPP FVAVNCGAIT ESLLEAELFG YEEGAFTGSR RGGRAGLFEI AHGGTLFLDE IGEMPLPLQT RLLRVLEEKA VTRVGGHQPI PVEVRVISAT HCDLDREIMQ GRFRPDLFYR LSILRLTLPP LRERQADILP LAESFLKQSL AAMEIPFTES IRHGLTQCQP LLLAWRWPGN IRELRNMMER LALFLSVDPA PTLDRQFMRQ LLPELMVNTA ELTPSTVDAH TLQDVLARFK GDKTAAARYL GISRTTLWRR LKAGAKDQSD N
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