Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smal_2315 |
Symbol | |
ID | 6476798 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Stenotrophomonas maltophilia R551-3 |
Kingdom | Bacteria |
Replicon accession | NC_011071 |
Strand | - |
Start bp | 2600737 |
End bp | 2605878 |
Gene Length | 5142 bp |
Protein Length | 1713 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 642731496 |
Product | YadA domain protein |
Protein accession | YP_002028701 |
Protein GI | 194366091 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport [W] Extracellular structures |
COG ID | [COG5295] Autotransporter adhesin |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.241675 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACCGCA TCTACCGGCG TGTATGGAAC CGCCAGCTCA ATGCTCTGGT TGTGGCCTCG GAACTGGCCA CCGGCGATAG CGGCGGCGGT GCCGCGCGCG ATCCGCGCAG TGTCCTGCTG ATGCCCACGG TGCTGGCGCT GGCACTGCTG TGTGCGCTGG CCAGCGGCCA CGCAGGAGCA TCAGAAACCA ATCAATCGCT GCGCGACCTG CAGGCATTGG CCGCCAAGTA TGCGCAGCCG ATGCCGGTGA AGGTCGATGC CGAAGTGGCA TTGGCCGCCG CCTCGCGCCA GGCGCAGAGC AGCCCTGCGA TCAGCGCCGA TGCACGTGTC GGCCTGCAGC TGAGCACTGC CTCGCTGCCG GTGGTGCGCG ATGTGTTGCC GGCCAGCGTG CAGGTGAATC TGGCGGCGAA CACCACGCCG AAGCAGGTTG CCGTTCCGGC ACTGGCCGCC GATGTCCGCG CCAACATCGG GCTGGGTCAT GCAGCGTCCA ATGCAACGAA GGTTGATGCA TCGCTGGCGG CACAGGTTGC GCCGTCCGCG CATGCACCGC TCGGCGTGGC TGCGGATGCG CGGGCGAAAG CCAACGTTGG CGTCGCCGGT GCGCAGGTGG CCTCGATCGA TACCGGCGCC ACGGCGGCGG CCGGCATCAG CAGTACCTCG GCGGGTTCGT TGCCTGGGCT GAAGACCTCG GTCGATGGCA AGGTCGATTC GCAGCTGAAG CTGGCTGGGC ACCAGATCAA TGGCCAGGGC CAGGTCAAAG CGACGGCAGC GGTCACGCTT CCGGCCAAGG AAGAACTGCC GGGCGAAACC CACGACCGTG CGATCACTGC AGCTTTCGAT ACCGGCGTCG CCGGCAACGT GCGCCTGCAG GCGCCGGATG GGCAGGAAGT GGTGGCCGAC CGCAATCTGA AACTCGCCGG CCAGGCAACG GTCGCGGCAC AGAACAGTGC GTTGGGTGTG GGCGGCCTGG TGGGCGGCGT GGTGGGCTCT GCGGGTAGTG CGGTGGGTGG CGCGCTCAAC GGTGTGGTCG GCACAGCTGG CAGCGCGGCG GGCGGCGCAC TGAACGGTAC CGTTGGCTCC GTCGGTGGTG CAGTCGGCGG TGCGCTCAAC GGCACCGTTG ATACTGTTGG CAGTGCGGTG GGCGGCGCAC TGAACGGCAC GGTTGGATCC GTCGGTGGTG CAGTTGGCGG TGCGCTCAAC GGAGCGGTCG GCACCGTCGG TGCAGTCGGT GGTGCCGTGG GTGGCGCACT GAACGGCACC GTTGGATCCG TCGGTGGTGC AGTTGGCGGT GCGCTCAACG GCACCGTGGG TACTGTTGGC AGTGCGGTGG GCGGCACGCT CAACGGAGCG GTCGGCACCG TCGGTGCAGT CGGTGGTGCC GTGGGCGGCG CACTGAACGG TACTGTCGGT AACGTCGGCA GCGCGGTGGG CGGTACACTC AACAACACGG TTGGCGCGGT GGGCAGCACC GTTGGCGGTG TGCTCAACGG CGCGACCGGC GGCAGCAGCG GTGGCCTCGG CGGCCTGCTG GGCAACACGC TGGGTAACGT CGGCGGTGCC GTGGGCAACC TGCTCAACGG CAACCTCAAT GGCACCATCG GCAATCTCGG CAGTGCCGTG GGTGGCCTGG TCGGTGGCAC GCTGAGCGGC CTCGGCCTGA CCAAGCCCTC GGCGATTCCG CCGACCAGTC CGAAGGCGCC GGCACCGGCC GACCCGAATG CGGGTTTGAT CATCGGCACC GGCGGCCTGG TTGGCAACGT CGGCCAGCTG ATCGGCCCGA CCACCACCAG CCTGTTTGGC GGCAACGGCT ACCTGAGCAA CGGCAACCTC AAGCTCAGCA ACGCCAACGT GATGCAGACC TACTCGACGG TCAATGTGCT GGGCCTGCCC GTGGTCAACC TGTCGCCGGT CGGCAGCACT CTCAACGGCC TGGGTGGCGC CGTCACCGGC GGTAGCTCGC ACCTGACCCT GATCGGTGGT GTCACCTCCG ACAGCTACAT CTACAACATC AACAACGGCA ATCCGGGCGG CCTGCTCGGG CTGCTGCTGC CGAAGGATTC GCCGGCGTGG GCGGCCAAGT GCCTGGACAT CGCCCTGGCC GACATCTCCT GCTGGGCCGT CAACGCCGCG CAGGACTACC AGGTGCTGAT GGGTGACGGC GCCTTTGCCA ACGGTTCGAA GGAAGTGGTG ATCGGCGCCA ATGCCCGCCA CGAGCTGCCG AAGGTCGATG CCAACGTCGC CTTCCCGGGT GCCGGCACCA ATGATCCGAG CAACCCGACC GGTGTCCCGA CTGCGGACTA TGCCGCCCGC ATGGGTCATT CGGTGATCGT CGGCGACAGC GCCGTCGGTA CCGCCAATGG GCAGACCCTG CTCGGTGCCG AGGCGACGTC GAACCAGGCC AACTCGGTCG CCCTGGGCTA CCGCTCGGCC GCGCTGCGCG GCGCCCAGGC CAGCTACAGC GCCTATGGCC TCACTGCACC GCAGGTCTCT GCCGGTGAAG TGTCGGTGGG CACCGCAGGC GGCGGCGAAC GCCAGATCAC CAACGTCGCT GCTGGTAGCG TCAACACGGA CGCGGTCAAC GTGGCGCAGT TGAAGGGCGC AATCAGCCTG ATCAACGGCG TGGCCGATGC CGCAGTGACC TACGACCTGG ATGGCGCCGG CAATCCGAAC TATCGCCGGG TAACGCTCGG TGCGGGCACC GGCACCACCA CCATCGGCAA CCTGGCCGCT GGTGCGGTCA GTGCCGGTAG CCTGGAAGCG GTCAATGGCG GCCAGCTGGC GACGACCAAC GCCGCCATCG CCGGCTTCTT CGGTGGTCGC GCGGCCTTCG ATCCGGCCAG CGGTGCCTTC ACTGCACCAC TGTTCGAGAT CAGCACCATC TCCACCGGCG GTGCGATCGC CAAGGGTCTG TATGAGAACG CCACCGATGC CTTCGCCGCG GTCGATGGTT CGCTGGTCAA CCTCAACACG CAGATCACCG ACATCCGCAA CGGCGGCACC AAGTACCTGC GGGTGAACTC GACCGGCACC GAAGCCCTGG CCAGTGGCAC GGACTCGATC GCCGTCGGCA CCAATGCCCG CGCCACCGCC GCCAACAGCA TCGCGGTGGG CGCCGGCAGC CTGGCCGACC GTGCCAACTC GGTGTCGATC GGTGCGGCCG GAGCCGAGCG TCAGGTCACC AACCTGGCCG CGGGTACCGC AGCGACCGAT GCGGTCAACG TCGGTCAGCT GCAGGCGTCG GAACAGGGGG CACTGCGCTA TGACCTCAAT GGCGACGGCA GCGTCAACTA CGCCAGTGCC ACGCTCGGCC AGACCGGCAC CGCCACCACG CTGCGTAATC TCGGCCCGGG TCAGGTCAGT GCCACCAGCA GTGAGGCCAT CAACGGTGCC CAGCTGTTTG CGGCCAACCA GGCCGTGGCC ACTCATCTCG GTGGTGGCGC AGCGGTCAAC GCCAGCGGCG TGCTGACCGC ACCGACCTAC TCGATCAACA ACGTCGCCGC CAACGGCACC GTGACCAAGG GCAGCTACAA CGATGTCGGC ACCGCCTTCG ACGCGGTCAG CAACTCGCTG GCCAACGTCG CCGACCAGAC CGATGAGATC GACAAGCTGG CCGTGAAGTA CGACGTCGAT GGCAGTGGCA ACGTGCTCAA CAGCGTGACG CTGACGGGTA CCGGCACCGG CGCGGTGAAG ATCACCAACG TCGCCGCCGG CAGCATCCTG GCCGGCAGCA GTGATGCCAT CACCGGCGAC CAGCTGTTCA GCACCAACAG CACCGTCGCC AACTACTTCG GTGGCACCAC CGCGTACAAC GGCACCACCA ACGTGTGGAC CGCGCCGAAG TTCAGCATCT CCAGCATCGC CACCGACGGC ACCTTTACCA GCGGCGACTA CAACAATGTC ACCGCCGCCT TCACTGCGGT GGACGGCTCG CTGAAGGTCC TCAACCAACG CATCACCAAC AACAGCGGTG GCAGTGCCTA CCTGGCAGTG AACTCGACCG CAGCGCCTGC AACGGCTGCC GGTGCGGAAG CGGTGGCGGT CGGCCCGCAG GCCAGTGCGG CCGGTGCCAA CAGCGTGGCG GTCGGCAACG GCGCCAGCGC CAGTGCCGGC AACAGCGTCG CCCTGGGTGC CGGGTCGGTG GCCAGCGTCG GTGCGCAGAG CGGCTACACC GGCGCCTATG GCCAGACCGG CGCCAGCAAC TCGGCCGGTG AGGTTTCGGT CGGCAGCACC GGCAGCGAGC GCAAGATCAC CCATGTCGCC GACGGTTCCG ATACGTACGA CGCAACCAAT GTCGGCCAGC TGAAGAACGG CGTGAACTAC GCCATCGACG AATCGAAGAA GTACACCGAC CAGAAGATCC AGAACATCAC CAACGTGGCC GGCAGCTTCC GCGCCAACAA CACCAACAAC CTGGCCGATC CGTCCGCCAG CGGTGCCAAC TCGGCCGCAG GTGGCGCAGG CTCCACCGCC GCCGGTGCCA ACTCGACCGC GCTGGGCAAT GGCTCGCAGG CGCAGGCCGA CAACTCGGTG GCGCTGGGTG CGGGTTCGGT GGCGAACCGG GCCAACACGG TCTCAGTGGG TGCCGCCGGT GCCGAACGCC AGGTGGTCAA CGTGGCCGAC GGTTCGCAGG CGACCGACGC GGTCAACGTA CGCCAGCTGC AGGCCTCGCA GCAGGGTACG ATCCGTTACG ACACCACGGT GAACGGCGCG ACCAACTACA ACAGTGTCAC GCTGGGCAGC ACCAACAGCG GCCCGACCAC GGTGCGTAAC GTCGCCGCCG GCACCGCCGG TACCGACGCA GTCAACGTCG ACCAGCTGAA GTCGGGCATG GCGCAGACCC TGGACTGGTC GAAGGCCTAC ACCGACGAGC GCATGGGTGG CTTCGAGCGC GACCTGCGCA AGACCGACAA CCGCGCCTCG GCCGGTATCG CCTCGGCAAT GGCCACCGCA GCACTGCCGC AGCCCAGCGA AGCGGGCCGC AGCATGGCCT CGGTCGCCGC CGGCAGCTAC AACGGCGAGT CGGGCGTGGC GGTTGGTATC TCCGGTGTCT CCGAAGGAGG GCGCTGGATC TACAAGTTCA GCGGCTCCAC CAACAGCCGT GGCGAGGCCG GTGTGGCCGT CGGTGCCGGC ATCCAGTGGT GA
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Protein sequence | MNRIYRRVWN RQLNALVVAS ELATGDSGGG AARDPRSVLL MPTVLALALL CALASGHAGA SETNQSLRDL QALAAKYAQP MPVKVDAEVA LAAASRQAQS SPAISADARV GLQLSTASLP VVRDVLPASV QVNLAANTTP KQVAVPALAA DVRANIGLGH AASNATKVDA SLAAQVAPSA HAPLGVAADA RAKANVGVAG AQVASIDTGA TAAAGISSTS AGSLPGLKTS VDGKVDSQLK LAGHQINGQG QVKATAAVTL PAKEELPGET HDRAITAAFD TGVAGNVRLQ APDGQEVVAD RNLKLAGQAT VAAQNSALGV GGLVGGVVGS AGSAVGGALN GVVGTAGSAA GGALNGTVGS VGGAVGGALN GTVDTVGSAV GGALNGTVGS VGGAVGGALN GAVGTVGAVG GAVGGALNGT VGSVGGAVGG ALNGTVGTVG SAVGGTLNGA VGTVGAVGGA VGGALNGTVG NVGSAVGGTL NNTVGAVGST VGGVLNGATG GSSGGLGGLL GNTLGNVGGA VGNLLNGNLN GTIGNLGSAV GGLVGGTLSG LGLTKPSAIP PTSPKAPAPA DPNAGLIIGT GGLVGNVGQL IGPTTTSLFG GNGYLSNGNL KLSNANVMQT YSTVNVLGLP VVNLSPVGST LNGLGGAVTG GSSHLTLIGG VTSDSYIYNI NNGNPGGLLG LLLPKDSPAW AAKCLDIALA DISCWAVNAA QDYQVLMGDG AFANGSKEVV IGANARHELP KVDANVAFPG AGTNDPSNPT GVPTADYAAR MGHSVIVGDS AVGTANGQTL LGAEATSNQA NSVALGYRSA ALRGAQASYS AYGLTAPQVS AGEVSVGTAG GGERQITNVA AGSVNTDAVN VAQLKGAISL INGVADAAVT YDLDGAGNPN YRRVTLGAGT GTTTIGNLAA GAVSAGSLEA VNGGQLATTN AAIAGFFGGR AAFDPASGAF TAPLFEISTI STGGAIAKGL YENATDAFAA VDGSLVNLNT QITDIRNGGT KYLRVNSTGT EALASGTDSI AVGTNARATA ANSIAVGAGS LADRANSVSI GAAGAERQVT NLAAGTAATD AVNVGQLQAS EQGALRYDLN GDGSVNYASA TLGQTGTATT LRNLGPGQVS ATSSEAINGA QLFAANQAVA THLGGGAAVN ASGVLTAPTY SINNVAANGT VTKGSYNDVG TAFDAVSNSL ANVADQTDEI DKLAVKYDVD GSGNVLNSVT LTGTGTGAVK ITNVAAGSIL AGSSDAITGD QLFSTNSTVA NYFGGTTAYN GTTNVWTAPK FSISSIATDG TFTSGDYNNV TAAFTAVDGS LKVLNQRITN NSGGSAYLAV NSTAAPATAA GAEAVAVGPQ ASAAGANSVA VGNGASASAG NSVALGAGSV ASVGAQSGYT GAYGQTGASN SAGEVSVGST GSERKITHVA DGSDTYDATN VGQLKNGVNY AIDESKKYTD QKIQNITNVA GSFRANNTNN LADPSASGAN SAAGGAGSTA AGANSTALGN GSQAQADNSV ALGAGSVANR ANTVSVGAAG AERQVVNVAD GSQATDAVNV RQLQASQQGT IRYDTTVNGA TNYNSVTLGS TNSGPTTVRN VAAGTAGTDA VNVDQLKSGM AQTLDWSKAY TDERMGGFER DLRKTDNRAS AGIASAMATA ALPQPSEAGR SMASVAAGSY NGESGVAVGI SGVSEGGRWI YKFSGSTNSR GEAGVAVGAG IQW
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