Gene Smal_2315 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmal_2315 
Symbol 
ID6476798 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameStenotrophomonas maltophilia R551-3 
KingdomBacteria 
Replicon accessionNC_011071 
Strand
Start bp2600737 
End bp2605878 
Gene Length5142 bp 
Protein Length1713 aa 
Translation table11 
GC content68% 
IMG OID642731496 
ProductYadA domain protein 
Protein accessionYP_002028701 
Protein GI194366091 
COG category[U] Intracellular trafficking, secretion, and vesicular transport
[W] Extracellular structures 
COG ID[COG5295] Autotransporter adhesin 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.241675 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCGCA TCTACCGGCG TGTATGGAAC CGCCAGCTCA ATGCTCTGGT TGTGGCCTCG 
GAACTGGCCA CCGGCGATAG CGGCGGCGGT GCCGCGCGCG ATCCGCGCAG TGTCCTGCTG
ATGCCCACGG TGCTGGCGCT GGCACTGCTG TGTGCGCTGG CCAGCGGCCA CGCAGGAGCA
TCAGAAACCA ATCAATCGCT GCGCGACCTG CAGGCATTGG CCGCCAAGTA TGCGCAGCCG
ATGCCGGTGA AGGTCGATGC CGAAGTGGCA TTGGCCGCCG CCTCGCGCCA GGCGCAGAGC
AGCCCTGCGA TCAGCGCCGA TGCACGTGTC GGCCTGCAGC TGAGCACTGC CTCGCTGCCG
GTGGTGCGCG ATGTGTTGCC GGCCAGCGTG CAGGTGAATC TGGCGGCGAA CACCACGCCG
AAGCAGGTTG CCGTTCCGGC ACTGGCCGCC GATGTCCGCG CCAACATCGG GCTGGGTCAT
GCAGCGTCCA ATGCAACGAA GGTTGATGCA TCGCTGGCGG CACAGGTTGC GCCGTCCGCG
CATGCACCGC TCGGCGTGGC TGCGGATGCG CGGGCGAAAG CCAACGTTGG CGTCGCCGGT
GCGCAGGTGG CCTCGATCGA TACCGGCGCC ACGGCGGCGG CCGGCATCAG CAGTACCTCG
GCGGGTTCGT TGCCTGGGCT GAAGACCTCG GTCGATGGCA AGGTCGATTC GCAGCTGAAG
CTGGCTGGGC ACCAGATCAA TGGCCAGGGC CAGGTCAAAG CGACGGCAGC GGTCACGCTT
CCGGCCAAGG AAGAACTGCC GGGCGAAACC CACGACCGTG CGATCACTGC AGCTTTCGAT
ACCGGCGTCG CCGGCAACGT GCGCCTGCAG GCGCCGGATG GGCAGGAAGT GGTGGCCGAC
CGCAATCTGA AACTCGCCGG CCAGGCAACG GTCGCGGCAC AGAACAGTGC GTTGGGTGTG
GGCGGCCTGG TGGGCGGCGT GGTGGGCTCT GCGGGTAGTG CGGTGGGTGG CGCGCTCAAC
GGTGTGGTCG GCACAGCTGG CAGCGCGGCG GGCGGCGCAC TGAACGGTAC CGTTGGCTCC
GTCGGTGGTG CAGTCGGCGG TGCGCTCAAC GGCACCGTTG ATACTGTTGG CAGTGCGGTG
GGCGGCGCAC TGAACGGCAC GGTTGGATCC GTCGGTGGTG CAGTTGGCGG TGCGCTCAAC
GGAGCGGTCG GCACCGTCGG TGCAGTCGGT GGTGCCGTGG GTGGCGCACT GAACGGCACC
GTTGGATCCG TCGGTGGTGC AGTTGGCGGT GCGCTCAACG GCACCGTGGG TACTGTTGGC
AGTGCGGTGG GCGGCACGCT CAACGGAGCG GTCGGCACCG TCGGTGCAGT CGGTGGTGCC
GTGGGCGGCG CACTGAACGG TACTGTCGGT AACGTCGGCA GCGCGGTGGG CGGTACACTC
AACAACACGG TTGGCGCGGT GGGCAGCACC GTTGGCGGTG TGCTCAACGG CGCGACCGGC
GGCAGCAGCG GTGGCCTCGG CGGCCTGCTG GGCAACACGC TGGGTAACGT CGGCGGTGCC
GTGGGCAACC TGCTCAACGG CAACCTCAAT GGCACCATCG GCAATCTCGG CAGTGCCGTG
GGTGGCCTGG TCGGTGGCAC GCTGAGCGGC CTCGGCCTGA CCAAGCCCTC GGCGATTCCG
CCGACCAGTC CGAAGGCGCC GGCACCGGCC GACCCGAATG CGGGTTTGAT CATCGGCACC
GGCGGCCTGG TTGGCAACGT CGGCCAGCTG ATCGGCCCGA CCACCACCAG CCTGTTTGGC
GGCAACGGCT ACCTGAGCAA CGGCAACCTC AAGCTCAGCA ACGCCAACGT GATGCAGACC
TACTCGACGG TCAATGTGCT GGGCCTGCCC GTGGTCAACC TGTCGCCGGT CGGCAGCACT
CTCAACGGCC TGGGTGGCGC CGTCACCGGC GGTAGCTCGC ACCTGACCCT GATCGGTGGT
GTCACCTCCG ACAGCTACAT CTACAACATC AACAACGGCA ATCCGGGCGG CCTGCTCGGG
CTGCTGCTGC CGAAGGATTC GCCGGCGTGG GCGGCCAAGT GCCTGGACAT CGCCCTGGCC
GACATCTCCT GCTGGGCCGT CAACGCCGCG CAGGACTACC AGGTGCTGAT GGGTGACGGC
GCCTTTGCCA ACGGTTCGAA GGAAGTGGTG ATCGGCGCCA ATGCCCGCCA CGAGCTGCCG
AAGGTCGATG CCAACGTCGC CTTCCCGGGT GCCGGCACCA ATGATCCGAG CAACCCGACC
GGTGTCCCGA CTGCGGACTA TGCCGCCCGC ATGGGTCATT CGGTGATCGT CGGCGACAGC
GCCGTCGGTA CCGCCAATGG GCAGACCCTG CTCGGTGCCG AGGCGACGTC GAACCAGGCC
AACTCGGTCG CCCTGGGCTA CCGCTCGGCC GCGCTGCGCG GCGCCCAGGC CAGCTACAGC
GCCTATGGCC TCACTGCACC GCAGGTCTCT GCCGGTGAAG TGTCGGTGGG CACCGCAGGC
GGCGGCGAAC GCCAGATCAC CAACGTCGCT GCTGGTAGCG TCAACACGGA CGCGGTCAAC
GTGGCGCAGT TGAAGGGCGC AATCAGCCTG ATCAACGGCG TGGCCGATGC CGCAGTGACC
TACGACCTGG ATGGCGCCGG CAATCCGAAC TATCGCCGGG TAACGCTCGG TGCGGGCACC
GGCACCACCA CCATCGGCAA CCTGGCCGCT GGTGCGGTCA GTGCCGGTAG CCTGGAAGCG
GTCAATGGCG GCCAGCTGGC GACGACCAAC GCCGCCATCG CCGGCTTCTT CGGTGGTCGC
GCGGCCTTCG ATCCGGCCAG CGGTGCCTTC ACTGCACCAC TGTTCGAGAT CAGCACCATC
TCCACCGGCG GTGCGATCGC CAAGGGTCTG TATGAGAACG CCACCGATGC CTTCGCCGCG
GTCGATGGTT CGCTGGTCAA CCTCAACACG CAGATCACCG ACATCCGCAA CGGCGGCACC
AAGTACCTGC GGGTGAACTC GACCGGCACC GAAGCCCTGG CCAGTGGCAC GGACTCGATC
GCCGTCGGCA CCAATGCCCG CGCCACCGCC GCCAACAGCA TCGCGGTGGG CGCCGGCAGC
CTGGCCGACC GTGCCAACTC GGTGTCGATC GGTGCGGCCG GAGCCGAGCG TCAGGTCACC
AACCTGGCCG CGGGTACCGC AGCGACCGAT GCGGTCAACG TCGGTCAGCT GCAGGCGTCG
GAACAGGGGG CACTGCGCTA TGACCTCAAT GGCGACGGCA GCGTCAACTA CGCCAGTGCC
ACGCTCGGCC AGACCGGCAC CGCCACCACG CTGCGTAATC TCGGCCCGGG TCAGGTCAGT
GCCACCAGCA GTGAGGCCAT CAACGGTGCC CAGCTGTTTG CGGCCAACCA GGCCGTGGCC
ACTCATCTCG GTGGTGGCGC AGCGGTCAAC GCCAGCGGCG TGCTGACCGC ACCGACCTAC
TCGATCAACA ACGTCGCCGC CAACGGCACC GTGACCAAGG GCAGCTACAA CGATGTCGGC
ACCGCCTTCG ACGCGGTCAG CAACTCGCTG GCCAACGTCG CCGACCAGAC CGATGAGATC
GACAAGCTGG CCGTGAAGTA CGACGTCGAT GGCAGTGGCA ACGTGCTCAA CAGCGTGACG
CTGACGGGTA CCGGCACCGG CGCGGTGAAG ATCACCAACG TCGCCGCCGG CAGCATCCTG
GCCGGCAGCA GTGATGCCAT CACCGGCGAC CAGCTGTTCA GCACCAACAG CACCGTCGCC
AACTACTTCG GTGGCACCAC CGCGTACAAC GGCACCACCA ACGTGTGGAC CGCGCCGAAG
TTCAGCATCT CCAGCATCGC CACCGACGGC ACCTTTACCA GCGGCGACTA CAACAATGTC
ACCGCCGCCT TCACTGCGGT GGACGGCTCG CTGAAGGTCC TCAACCAACG CATCACCAAC
AACAGCGGTG GCAGTGCCTA CCTGGCAGTG AACTCGACCG CAGCGCCTGC AACGGCTGCC
GGTGCGGAAG CGGTGGCGGT CGGCCCGCAG GCCAGTGCGG CCGGTGCCAA CAGCGTGGCG
GTCGGCAACG GCGCCAGCGC CAGTGCCGGC AACAGCGTCG CCCTGGGTGC CGGGTCGGTG
GCCAGCGTCG GTGCGCAGAG CGGCTACACC GGCGCCTATG GCCAGACCGG CGCCAGCAAC
TCGGCCGGTG AGGTTTCGGT CGGCAGCACC GGCAGCGAGC GCAAGATCAC CCATGTCGCC
GACGGTTCCG ATACGTACGA CGCAACCAAT GTCGGCCAGC TGAAGAACGG CGTGAACTAC
GCCATCGACG AATCGAAGAA GTACACCGAC CAGAAGATCC AGAACATCAC CAACGTGGCC
GGCAGCTTCC GCGCCAACAA CACCAACAAC CTGGCCGATC CGTCCGCCAG CGGTGCCAAC
TCGGCCGCAG GTGGCGCAGG CTCCACCGCC GCCGGTGCCA ACTCGACCGC GCTGGGCAAT
GGCTCGCAGG CGCAGGCCGA CAACTCGGTG GCGCTGGGTG CGGGTTCGGT GGCGAACCGG
GCCAACACGG TCTCAGTGGG TGCCGCCGGT GCCGAACGCC AGGTGGTCAA CGTGGCCGAC
GGTTCGCAGG CGACCGACGC GGTCAACGTA CGCCAGCTGC AGGCCTCGCA GCAGGGTACG
ATCCGTTACG ACACCACGGT GAACGGCGCG ACCAACTACA ACAGTGTCAC GCTGGGCAGC
ACCAACAGCG GCCCGACCAC GGTGCGTAAC GTCGCCGCCG GCACCGCCGG TACCGACGCA
GTCAACGTCG ACCAGCTGAA GTCGGGCATG GCGCAGACCC TGGACTGGTC GAAGGCCTAC
ACCGACGAGC GCATGGGTGG CTTCGAGCGC GACCTGCGCA AGACCGACAA CCGCGCCTCG
GCCGGTATCG CCTCGGCAAT GGCCACCGCA GCACTGCCGC AGCCCAGCGA AGCGGGCCGC
AGCATGGCCT CGGTCGCCGC CGGCAGCTAC AACGGCGAGT CGGGCGTGGC GGTTGGTATC
TCCGGTGTCT CCGAAGGAGG GCGCTGGATC TACAAGTTCA GCGGCTCCAC CAACAGCCGT
GGCGAGGCCG GTGTGGCCGT CGGTGCCGGC ATCCAGTGGT GA
 
Protein sequence
MNRIYRRVWN RQLNALVVAS ELATGDSGGG AARDPRSVLL MPTVLALALL CALASGHAGA 
SETNQSLRDL QALAAKYAQP MPVKVDAEVA LAAASRQAQS SPAISADARV GLQLSTASLP
VVRDVLPASV QVNLAANTTP KQVAVPALAA DVRANIGLGH AASNATKVDA SLAAQVAPSA
HAPLGVAADA RAKANVGVAG AQVASIDTGA TAAAGISSTS AGSLPGLKTS VDGKVDSQLK
LAGHQINGQG QVKATAAVTL PAKEELPGET HDRAITAAFD TGVAGNVRLQ APDGQEVVAD
RNLKLAGQAT VAAQNSALGV GGLVGGVVGS AGSAVGGALN GVVGTAGSAA GGALNGTVGS
VGGAVGGALN GTVDTVGSAV GGALNGTVGS VGGAVGGALN GAVGTVGAVG GAVGGALNGT
VGSVGGAVGG ALNGTVGTVG SAVGGTLNGA VGTVGAVGGA VGGALNGTVG NVGSAVGGTL
NNTVGAVGST VGGVLNGATG GSSGGLGGLL GNTLGNVGGA VGNLLNGNLN GTIGNLGSAV
GGLVGGTLSG LGLTKPSAIP PTSPKAPAPA DPNAGLIIGT GGLVGNVGQL IGPTTTSLFG
GNGYLSNGNL KLSNANVMQT YSTVNVLGLP VVNLSPVGST LNGLGGAVTG GSSHLTLIGG
VTSDSYIYNI NNGNPGGLLG LLLPKDSPAW AAKCLDIALA DISCWAVNAA QDYQVLMGDG
AFANGSKEVV IGANARHELP KVDANVAFPG AGTNDPSNPT GVPTADYAAR MGHSVIVGDS
AVGTANGQTL LGAEATSNQA NSVALGYRSA ALRGAQASYS AYGLTAPQVS AGEVSVGTAG
GGERQITNVA AGSVNTDAVN VAQLKGAISL INGVADAAVT YDLDGAGNPN YRRVTLGAGT
GTTTIGNLAA GAVSAGSLEA VNGGQLATTN AAIAGFFGGR AAFDPASGAF TAPLFEISTI
STGGAIAKGL YENATDAFAA VDGSLVNLNT QITDIRNGGT KYLRVNSTGT EALASGTDSI
AVGTNARATA ANSIAVGAGS LADRANSVSI GAAGAERQVT NLAAGTAATD AVNVGQLQAS
EQGALRYDLN GDGSVNYASA TLGQTGTATT LRNLGPGQVS ATSSEAINGA QLFAANQAVA
THLGGGAAVN ASGVLTAPTY SINNVAANGT VTKGSYNDVG TAFDAVSNSL ANVADQTDEI
DKLAVKYDVD GSGNVLNSVT LTGTGTGAVK ITNVAAGSIL AGSSDAITGD QLFSTNSTVA
NYFGGTTAYN GTTNVWTAPK FSISSIATDG TFTSGDYNNV TAAFTAVDGS LKVLNQRITN
NSGGSAYLAV NSTAAPATAA GAEAVAVGPQ ASAAGANSVA VGNGASASAG NSVALGAGSV
ASVGAQSGYT GAYGQTGASN SAGEVSVGST GSERKITHVA DGSDTYDATN VGQLKNGVNY
AIDESKKYTD QKIQNITNVA GSFRANNTNN LADPSASGAN SAAGGAGSTA AGANSTALGN
GSQAQADNSV ALGAGSVANR ANTVSVGAAG AERQVVNVAD GSQATDAVNV RQLQASQQGT
IRYDTTVNGA TNYNSVTLGS TNSGPTTVRN VAAGTAGTDA VNVDQLKSGM AQTLDWSKAY
TDERMGGFER DLRKTDNRAS AGIASAMATA ALPQPSEAGR SMASVAAGSY NGESGVAVGI
SGVSEGGRWI YKFSGSTNSR GEAGVAVGAG IQW