| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smal_2251 |
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| Symbol | |
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| ID | 6476664 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Stenotrophomonas maltophilia R551-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011071 |
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| Strand | - |
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| Start bp | 2524422 |
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| End bp | 2529155 |
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| Gene Length | 4734 bp |
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| Protein Length | 1577 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642731432 |
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| Product | YD repeat protein |
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| Protein accession | YP_002028637 |
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| Protein GI | 194366027 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.37026 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTTGGAAC GACTGAAGAG CTTCTCGCGT GCCGCGCTGG CCATTGTTGC CGTCGGCTGC
TTCGCCCCTG CGGTGGCACA GGCTCAGGAA AGCAAGATCA CCTGGCGCAT TTCGCAGCCC
GGTGGCGATG CGACGCAATA CAAGACCCAA CAGGCGGCGG TGGCCGCCAT CAAGAACCTG
CCGGCGCCCA GCCCGTTCCC GCCGGAGTTC CAGTTCGGCT GGCAGTCTGT CGACAAGATC
AAGTCGAAAG TCGTGGACTT GAACGGAAAC ACGTCGATCA CCTACTGGAT GGGGAAGGCG
CAACCTTCGG ATCCAGACTG GACCTATCTG GCCACGGCGG AATTTACGAC CGAAGAGGCG
ATGGTCGCGA GCTATCTCGC GCGCGTCCAG GCCACCAATC CTGTCTGTCC GGGTGCTGCT
GTGACTCCAC AGGGAGACTG GTTCTCGGGT GTGCCCGAAA TGGAGGGGGT GGTCGAGTCC
AGGTTCTATC AGATCACGCA TATGATTGGG CAGAACACGG CCGAATCGCC CTGCACGCCC
CACGTGAGTC AGGCGGCCTT CGGCCGCAAG CGCCGCCTTG ATTGCCCTGT TCCGCTTACG
CAGTGGTCCA ACAAGCACAA CGCCTGCGTC AACGAGGACT TCGTTGCGAC CATCACCTCG
AAGTCGCAGA AGTGCGACAA GGATGGCGGC AACGGTAACT GCCCCATGTC CCGCAAGGAT
ACAGCTGCGA ACATGAGTCC GATTCCCGAC AATGACCCGG CCTCCAACGG CGGTACCTGC
GACGGCAATG TCGGCAACCC ATGTGATGTT AAAACGGGCG AGAAGTATGA GATCGCGCCG
GACTTCGATC TGGGCTGGAT CGCGCTGACG CGGTTCTATC ACTCCGGCAT CTCCACCTCA
TCCGGCGGCT TTGGCTATGG CTGGACCCAT TCGCTGGGCG CCCACCTGGC ACTGGATGGC
GTTGACAGTG TGGGCATCAT TGAAAGCACC GGTTTCCAGC GTGCATTCAA GAAGATCGGC
CAAGCCTATG AGGCGGACGA CGACAGTGGT GATCGTCTCG TCCAGAACGG TAACTGGACG
CTGTATTCGG CGGGTTCCAT CTCGACCTTC GGCGCGGACG GGCGTCTGAT CACCAAGCGC
TTCCCGGATG CCACGTCGCT GACCTATATC TACGATGACA GCGACCGCCT TGCGGCCGTC
ACCCACAGCA GTGGCCGCAC GCTGGAGTTC GTCCACCAGT CCAACGACTA TGAGGCGCTG
ATCAGTTCGG TACTGGTCGA AGGCATTGCG CTCGCCACCT ATACCTACAC GCCGCAGAAC
CAGGTTGCCA CGGTGACCTA TGCGGGTGGC GGTGTGCGCA CGTATCACTA CGAGAACCAA
GCTTTCCCCC AGCATCTGAC CGGCATCACG GCGGAGGACG GGCGTCGCTA CAGCACTTTT
ACCTATGATT CCGACGGCCG TGTCATTTCC AGTCAGCACG CCGGCGGTGC CGATGGCGTG
ACGCTGGCCT ATAGCCCCAA TGGCGGTGCG GTCGTGACCG ACGCGCTTGG GCGGCAGACC
GACTACACCC TGACACCCGG CGGCGACACT GCGCCGTCGC GCAAGGTGAC CGGCCTGACG
GATTCGCAGG GAACCGTCAG CCGAACCTAC TACGACCAGA GTGTCGACTT CCGCCGGCGT
CTGGATACCT ACACCGATCG CCGCGGCATC CAGACCAAGC ACACCTATGC GCAGGGCACC
GATCCGGTGA GCGGTCGTGC CGTCAGCATC CATACCGTGA CCGAAGCGGT CGGCCTGCCC
GAACAGCGGG TGGTGACCAC CGCGCGCGAC GTCGAAACCA ATGCGGTACT GACCACCCGC
ATCGGCAATC GTGAAACCCG AACGTCCTTC AATACCCGGC GACAGCCGAC AACCAACACG
GTGACCGACA TCGCGTCCGG TCAGACGCGC ATCACCAGCT ACACGTATTG CGAAGCTGCG
GACGTGGCTG CGGCAGGGAG CTGCCCTGTG GAAGGGCTGC TGAAGAGTGT GGATGGTCCG
CGCACGGATG TGGTTGATGC CGTTACCTAC GCCTACTACC CGGCGGATGA TGCGGGATGC
GCGGCCAATG GCGCCTGCAG CTATCGCAAG GGCGACCTGC GCAGCGTGAC CAATGCGCTG
GGCCAGACGG TCGAGACCTT GGCCTACGAC GCGTTCGGGC GGCCGTTGTC GGTCAAGGAC
GCCAACGGCG TGGTCACCGA TTACACGTAC CATGCTCGCG GCTGGCCGAC CTCGATCACC
GTACGCGGCG CGACCACTGC CGAGGATCGG GTCACCCAGC TGAGCTATTG GCCGACGGGC
CAGGTGCAGA AGATCACCGA GCCGGATGGC AGCAGCGTTT CCTACGTCTA CGATGCTGCG
CTGCGCTTGA CCGACATCGA GGACAACGCA GGCAACACGA TTCACTACAC ACTGGACAAT
GCCGGCAACC GCCTCAAGGA AGACACGCTG GACACCGGTG GCACGCTGCG CCGTACCCTG
GCACGCACGT TCAACACGCT CGGCCAGCTG ACCGCGCTGA AGGACGCAGG CAATCACGCT
ACCGGCTTTG CCTACGATGC CAACGGCAAC CTGCAGACGG TGACCGACGC ACTGCAGCGC
GTGACCAGCC AGCAGTACGA CCCGCTGAAC CGCCTGGCCC AGACCCTGCA GGACGTGGGC
GGCGTCGCGG CGGAGATCCG CAGCCAGTAC AACGCGCTGG ACCAGGTCAC CCAGGTCACT
GATCCGAAGG GCCTGCACAC CACCTACGCC TACAACGGCT TCGGTGATCT GACCGGACAG
GTCAGCCCGG ACAGTGGCGC CAGCAGCTAC ACCGTGGACG CGGCAGGCAA TCGCAAGGCC
GCTACCGACG CGCGCGGCGT CACCGCCACC TATCACTACG ATGCGCTGAA CCGTTTGATC
GGAGTCGCCT ATCCGGACCC CAATCTGGAC GTAGGCTACA GCTATGACGT GGCGCCAGCG
GCCTGCGCCG CCGACGAGCG CTTCGCCAAG GGGCGGCTGG GGCAGGTGCT GCATGCCAAC
GGCAGCACCC AGTACTGCCA TGACCGCTTC GGTCAGGTCA CCCGCAAGGT GCAGACCGTC
AATGGTGTGG CCAGCACGCT GCGCTACGCC TACAGCAAGT CGGGCCGTCT GACTGCGTTG
ACCTACCCCG ACGGCAGCGT GGCCGACTAC GTGCGTGATA TCCAGGGCCG CATCAGCCAG
ATCGGCCTGA CCCGGCCCGG CCAGGCGCGC CAGATCGTGG TGAACAACGT GAGCTATGCA
GCCTTCGGTC CGGCGACCGG CTGGACCTAC GGCAATGGCC GCCAGCTGCA GCGTCCGCTG
GATCTGGACT ACCGCCCGCA GGCGGTACAT GACCCGGCCG CAGATGGCCT GTCGCTGGGC
TACGGCTATG ATCCGGTCGG TTCGATCACC GAGCTGAAGA ACGGCACTGG CTCGACGGTA
CTGGCCAAGT ACGCCTACGA CGCGCTGGGT CGCCTGACCC AGACCCAGGA CGGTGCGACC
GGCACGCCGA TTGAAACCTA TGCCTACGAC GCCACCGGCA ATCGCACCGC GCTGACCACT
TCGGCGGGCA CTGCCAGCTA CACCTATCCC GCAACCAGTC ATCGCCTGAC TGCGGTGGAT
GGTGAAGCGC GCAACCATGA CGCGGTGGGC AACACCACCA GCATCGGCGG CAAGACGTTC
ATCTACAACG ATGCCAACCG CATGAACGCG GTGAAGCAAG GCAACGCCGT ACTGGAAAGC
TACGCCTACA ACCATCGCGG CGAGCGCGTG CTGCGCACCC CGGCTGGTGG CGCTGCACAG
ATCACCCTGT ATAACGAAGC AGGGCAGTGG CTGGGCAACT ACTCGGCCAC GGGCCAGGCG
CAGCAGCAGG CCATCTGGCT GGACAACTAC CCGGTGGCGC TGATCAGCGT GCCAAGCGCA
GGTGTGCCGG AGTTGGCCTA CATCCAGCCG GACCATCTGG GTACGCCGCG CGTGGTGATC
GACCCGGCGC GCGATGTGGC GATCTGGGAG TGGAGCAACA AGAGCGAGGT GTTCGGCAAC
CAGATTCCGA GTACCGACCC GGACGGCGAT GGCGTGGCAT TCGAGTTGGC GCTGCGATTC
CCGGGCCAAC AGGCGACGGA TGCGAGTGGG CTGTTCTACA ACTATCGGAG GGAATACGAC
CCGGCAGTGG GGCGGTATAC CCAGAGCGAT CCGATTGGGT TGATGGGTGG ACTGAACTCG
TTCGCGTATG GAAGCGGAGA TCCCACTGGC CGTGTCGATC CGCTAGGCTT GGCCGATAAA
AAATACATAC CTCAGGCCGT ACCTGTTTCA CCGGAGTTGC AGGCGGTCGG AAATCGGCTC
CAGAGGCTGG CAAACCAAGC AGCGTCCACC ATTGACGCCA CCTGTGGATG GCGTTGCTCA
CTGCCTTGGA TACGCGGAAC GCTCATCCAT AGTGAGTTCA AGCGCCTGGT GGATACCACA
TGCCCGACGT CTCAGTATGC GACTGAGGTG AGCTACGCTG GCCGTAGGGT TGTTAGGTAT
GGGTACCCGG GGTCCTCACG GGCGGACGCT GTGTACGGCC CAGTTGATGC ACCTCAAGCC
ATCTTCGATC TGAAGACTGG TTGGGCTTAC ATCTCCTGGG ATCAGTACAA TAAGTACGTC
AAGAATCTCC CCGAGGGAAC TCTCGTGGTG GAACTTAAGC CTGAAGGCCG TTGA
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| Protein sequence | MLERLKSFSR AALAIVAVGC FAPAVAQAQE SKITWRISQP GGDATQYKTQ QAAVAAIKNL
PAPSPFPPEF QFGWQSVDKI KSKVVDLNGN TSITYWMGKA QPSDPDWTYL ATAEFTTEEA
MVASYLARVQ ATNPVCPGAA VTPQGDWFSG VPEMEGVVES RFYQITHMIG QNTAESPCTP
HVSQAAFGRK RRLDCPVPLT QWSNKHNACV NEDFVATITS KSQKCDKDGG NGNCPMSRKD
TAANMSPIPD NDPASNGGTC DGNVGNPCDV KTGEKYEIAP DFDLGWIALT RFYHSGISTS
SGGFGYGWTH SLGAHLALDG VDSVGIIEST GFQRAFKKIG QAYEADDDSG DRLVQNGNWT
LYSAGSISTF GADGRLITKR FPDATSLTYI YDDSDRLAAV THSSGRTLEF VHQSNDYEAL
ISSVLVEGIA LATYTYTPQN QVATVTYAGG GVRTYHYENQ AFPQHLTGIT AEDGRRYSTF
TYDSDGRVIS SQHAGGADGV TLAYSPNGGA VVTDALGRQT DYTLTPGGDT APSRKVTGLT
DSQGTVSRTY YDQSVDFRRR LDTYTDRRGI QTKHTYAQGT DPVSGRAVSI HTVTEAVGLP
EQRVVTTARD VETNAVLTTR IGNRETRTSF NTRRQPTTNT VTDIASGQTR ITSYTYCEAA
DVAAAGSCPV EGLLKSVDGP RTDVVDAVTY AYYPADDAGC AANGACSYRK GDLRSVTNAL
GQTVETLAYD AFGRPLSVKD ANGVVTDYTY HARGWPTSIT VRGATTAEDR VTQLSYWPTG
QVQKITEPDG SSVSYVYDAA LRLTDIEDNA GNTIHYTLDN AGNRLKEDTL DTGGTLRRTL
ARTFNTLGQL TALKDAGNHA TGFAYDANGN LQTVTDALQR VTSQQYDPLN RLAQTLQDVG
GVAAEIRSQY NALDQVTQVT DPKGLHTTYA YNGFGDLTGQ VSPDSGASSY TVDAAGNRKA
ATDARGVTAT YHYDALNRLI GVAYPDPNLD VGYSYDVAPA ACAADERFAK GRLGQVLHAN
GSTQYCHDRF GQVTRKVQTV NGVASTLRYA YSKSGRLTAL TYPDGSVADY VRDIQGRISQ
IGLTRPGQAR QIVVNNVSYA AFGPATGWTY GNGRQLQRPL DLDYRPQAVH DPAADGLSLG
YGYDPVGSIT ELKNGTGSTV LAKYAYDALG RLTQTQDGAT GTPIETYAYD ATGNRTALTT
SAGTASYTYP ATSHRLTAVD GEARNHDAVG NTTSIGGKTF IYNDANRMNA VKQGNAVLES
YAYNHRGERV LRTPAGGAAQ ITLYNEAGQW LGNYSATGQA QQQAIWLDNY PVALISVPSA
GVPELAYIQP DHLGTPRVVI DPARDVAIWE WSNKSEVFGN QIPSTDPDGD GVAFELALRF
PGQQATDASG LFYNYRREYD PAVGRYTQSD PIGLMGGLNS FAYGSGDPTG RVDPLGLADK
KYIPQAVPVS PELQAVGNRL QRLANQAAST IDATCGWRCS LPWIRGTLIH SEFKRLVDTT
CPTSQYATEV SYAGRRVVRY GYPGSSRADA VYGPVDAPQA IFDLKTGWAY ISWDQYNKYV
KNLPEGTLVV ELKPEGR
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