| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smal_1773 |
|---|
| Symbol | |
|---|
| ID | 6475726 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Stenotrophomonas maltophilia R551-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011071 |
|---|
| Strand | - |
|---|
| Start bp | 1986487 |
|---|
| End bp | 1989630 |
|---|
| Gene Length | 3144 bp |
|---|
| Protein Length | 1047 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642730955 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_002028160 |
|---|
| Protein GI | 194365550 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.133871 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.72851 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGAATGA AGCATTCAAC ACGCACGCAT GGTCACGACG CACTGTCGCT GGCCATCGCG
CTGGCCCTGA CCGCCGCCAT CGTGCCGGCA GGCGCCGCCG CACAGCAGGC TGCCTCCGCC
GGCGCGCAGG ACGCCACCAC CCTGGACAGC GTCCAGGTCA CCGGCTATCG CTACGCCATC
GAGAAGAGCC TCGAACAGAA GCGCGACGCC AACGCCGTGG TCGAAGTGAT CACCGCTGAA
GATGTCGGCA AGTTCCCCGA CAAGAACGTC GCCGACGCAC TGCAGCGCGT GCCCGGCGTG
ATCATCACCC GCAGTGGTGG CGAAGGTAAG AACGTCAGCG TGCGTGGCCT GGCCTCGGAC
CTGACCCTGA CCCAGTTGAA CGGCAACTAC GTCGCCACCT CGGAAACCAA CGACGAAGCA
TCGCGTTCGT TCAACTACAC CCTGCTGCCC TCGAACATGC TGTCGGCGGC GGAGCTGTAC
AAGACGCCGG AAGCACGCAT CGACGAAGGC GGCATCGGCG GCACCGTGAT CCTGCGCACC
CGCCGTCCGC TGGACATGAA AGCCAACTCC GGCTTCGCCT CGATCGAAGG TACCTCTTCC
GACACCAGCA GCGGCGTCGA CCCGCAGGCG TCGGCGATGT ACTCCTGGCA CAGCAAGGAC
GAGCGCTTCG GCCTGCTGAT CGGTGCGACC CGGCAGGTCC GTACCAACCG CAGCATGGAA
GTCAGCACCG AAGACTGGCA GTGGTACAGC GACCGTGTGG ACGCCAATGG CGGCGTCATC
CATGACTATG TCTGGAATGC TGCCGGCCGC ACCCGCAATC CGGCCGTCGA CGTGTACGGC
AACGCGTTGC CGGATGCATC GCAGTTCTGG GGCCGCTCGG GCATCTACAA CCAGAATGGC
GGCCATTACT CCGGCTTCTT CATGCCGACC TCGGTCAACT TCGCCGTGCG TGACGAGCGC
CGCGAGCGCA CCGGTGGCCA GCTGACGTTC CAGTTCAAGC CGCTCGACAA CGTCACGATG
ACGGCGAATT ACTTCCGCTT CGAGCTGCAG GGCAACTACA CCCAGAACAT GCTGAAGGTT
CCGGAATGGA ACCTGGCGCG CGTGGCCGGC GACGGCAACT GGGAAGGCGG CCGCATGCTC
AACGGCTTCA CCATGGACCC CAGCGGCACC ATCGTGACCG GCGCGCAGTA CCAGATGCAG
CCAGGCCGCA ACTACATCTG CAGCGAGGAT CAGGCGGCCG CAGCCGGCCT GCGTCCGGGC
GGCTGGGGTC CGGATGACTG CACCATCCCC ACCCCGCAGC TGACCGGCAC CTACAGCAAG
GAAAAAGCGC TGTCGCAGAC GGCCGACCTG ACCATCGACT GGGACATCAG CCCGCTGTGG
AAAGCCAGCT TCGCTGGTGG CAGGACCTGG TCGGAGGGCG GCCCGTCGAT GAATTTCCGC
ATGTCGGCCA AGCCGCGTCG CCAGGTCGAT GGCCAGTGGC AGGCCGGCAA TACGGCCACG
TCCTGGGACC TGACCGGCAC CCCGTCGGTG AACTTCTCGC CGGACCTGCA GCAGCAGCTG
ATGGCCGGCA TAGCCGAGGT GGATACCGGT TCGACCGACT CGTCGTGGAA GCGTACCGAG
GTCAAGCAGA ACCACTTCCA GGCCGACGTG ACCAAGATGT TCGAGGCCGG CTGGCTGGAC
TCGATCCAGT TCGGCGCCAA GTACAGCGAC GGCAAGGTCC ACCGCAACAC CGGCAATACC
TACTGGGTCT GCCAGGGTGC CGACCCTGGC GACTACAGCA AGCGTTACCA GGCAGGCTGT
GATTCGACCG CCGGTATCGC GCAGCCGGGC TTCTTCCTGT CGCAGCCGAT GGACAACATT
GCCGGTGGGT TCAACGCCAA TGTGTTCCCG GGCATCAACT ACCCCGCGTA CATCGACTAT
CTGAACAACC GCTACGGCGG CGTGCAGAAC CGCACCGAGG AAGACTTCGT CTACGACGTG
CAGGAGAAGG TGTACTCGGG TTACCTGCAG GCCAACTTCC GCACCGAGCG ACTGCGCGGC
AATGTCGGCG TGCGCGTGGC ACGGACCAAG CAGCATGCAT CCTCGAGCGA TTCGGTCGAG
CGCTTCAATG ACTACTTCGC CGACAACGCC GCCGGTTCGC CGTTGGCCTG CACCGATCCG
TCGGCGGCCG CGCTGCTCGG CTCCAACAGC GGCTATGGCT GCGAGAGCGG CTTCGTGCGC
CTGCCGGACG ATCTGGCACG CGCCAAGACC TACGAGCAGT CCTCGCTGGA CAAGACCTAC
ACCGACATCC TGCCGAGCTT CAACATCGCC TGGGACATCA CCGATTCGCT GGTGCTGCGT
GGTGCCGCGT CGAAGGTCAT CGCCCGCCCC AGCTACACCA ACATCGCCTA CCCGGGCGGC
CTGAGCTACT ACTCCGACGA GTACAGCAAC GACCGCCGCG TCGCCGGCGG CGCCACCAAC
CCGGGCTGGT ACGGTTCGGG CAGCAACAAG GAACTGGAGC CGTTCAAGGC CACCCAGTAC
GACCTGAGCC TGGAGTGGTA CTTCAAGCCG GGCGCAGTGG CCGGTGTCGG CCTGTTCCGC
AAGGACGTGA AGAACTTCAC CGTGCCGGTG GTCCGCGACC AGCAGATGAA CGTCGGCGGC
CAGAACGTGA CCGTGCAGAA GTACGAGACC CAGGCCAACG GCCGCGATGG CGTGTCGCAG
GGCGTGGAAA TCTACGGCCA GTACACCCTC GACTTTGGCC TCGGCTTCCA GGCCAACTAC
ACCTACAACG ACACCAACAT GGCGTCGGTG GAGATCAACG GCGAGCAGAT CGGTTCTTCG
CCGCTGGTGG GGAGTGCCAA GAACCAGGCC AACTTCACCA TGTTCTACGA GAACGAGAAG
TTCCTGGCGC GCGCCTCGTA CAATCGTCGT GGCGTGGTGG TCGGTGGACT CAACAACGGT
TTCAGCTCGT ATTCCGAGCC GTACGACCAG CTGGACTTGA ACGCGGCCTA CAACATCCGC
GAAGACCTGG CGCTGACGGC CTCGGTGCTC AACGTCACCA AGTCCGAGCA GCGCGTGCAC
CTGGGCAACG ACACCAGGGC GCGCCTGCTG TCCAACACCT ACTCCGGCCG CCAGTACTAC
ATCGGCCTGA CCTGGAAGTT CTAA
|
|---|
| Protein sequence | MGMKHSTRTH GHDALSLAIA LALTAAIVPA GAAAQQAASA GAQDATTLDS VQVTGYRYAI
EKSLEQKRDA NAVVEVITAE DVGKFPDKNV ADALQRVPGV IITRSGGEGK NVSVRGLASD
LTLTQLNGNY VATSETNDEA SRSFNYTLLP SNMLSAAELY KTPEARIDEG GIGGTVILRT
RRPLDMKANS GFASIEGTSS DTSSGVDPQA SAMYSWHSKD ERFGLLIGAT RQVRTNRSME
VSTEDWQWYS DRVDANGGVI HDYVWNAAGR TRNPAVDVYG NALPDASQFW GRSGIYNQNG
GHYSGFFMPT SVNFAVRDER RERTGGQLTF QFKPLDNVTM TANYFRFELQ GNYTQNMLKV
PEWNLARVAG DGNWEGGRML NGFTMDPSGT IVTGAQYQMQ PGRNYICSED QAAAAGLRPG
GWGPDDCTIP TPQLTGTYSK EKALSQTADL TIDWDISPLW KASFAGGRTW SEGGPSMNFR
MSAKPRRQVD GQWQAGNTAT SWDLTGTPSV NFSPDLQQQL MAGIAEVDTG STDSSWKRTE
VKQNHFQADV TKMFEAGWLD SIQFGAKYSD GKVHRNTGNT YWVCQGADPG DYSKRYQAGC
DSTAGIAQPG FFLSQPMDNI AGGFNANVFP GINYPAYIDY LNNRYGGVQN RTEEDFVYDV
QEKVYSGYLQ ANFRTERLRG NVGVRVARTK QHASSSDSVE RFNDYFADNA AGSPLACTDP
SAAALLGSNS GYGCESGFVR LPDDLARAKT YEQSSLDKTY TDILPSFNIA WDITDSLVLR
GAASKVIARP SYTNIAYPGG LSYYSDEYSN DRRVAGGATN PGWYGSGSNK ELEPFKATQY
DLSLEWYFKP GAVAGVGLFR KDVKNFTVPV VRDQQMNVGG QNVTVQKYET QANGRDGVSQ
GVEIYGQYTL DFGLGFQANY TYNDTNMASV EINGEQIGSS PLVGSAKNQA NFTMFYENEK
FLARASYNRR GVVVGGLNNG FSSYSEPYDQ LDLNAAYNIR EDLALTASVL NVTKSEQRVH
LGNDTRARLL SNTYSGRQYY IGLTWKF
|
|---|
| |