| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smal_0568 |
|---|
| Symbol | |
|---|
| ID | 6477472 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Stenotrophomonas maltophilia R551-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011071 |
|---|
| Strand | + |
|---|
| Start bp | 676942 |
|---|
| End bp | 679764 |
|---|
| Gene Length | 2823 bp |
|---|
| Protein Length | 940 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 642729713 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_002026956 |
|---|
| Protein GI | 194364346 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0632734 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGACCA CGCTGCTGTC CACCGTCATT GCTATCGCGC TGGCTACAGC CACCGCACCG
GTACTGGCAC AGGCCGATGC GCCGCTGCCA TTGTCCGGTG CGGCCTACCG CATCGCCGAG
CAGGCGTTTG CCGCCTATGA ACGTGGCGAT TACCCCGCGG CCTACCAGCA GTCCAGTGAA
GCGATCCGGC TGCGCCCGGA TGTGGTGCGG CTGCGCCTGC TGCAGATCTA TGCGCTGCAG
AAGCTCGGTC GTGGCGCAGA AGCGCAGCAG CGGGCGCGCC GTGCGCTGGA CGCGGGGATG
AAGGATCCGG CTTTGCCGGC GCTGGCCGCC GCTGTGCCCA AGACGACCAC AGGTGCGGCG
CGTAGCGCAG CGTTGCCACG TGCGTCCGCC ACGGCGGCCG ACCGCAACAG CCGGCAGGCC
TACCTGCTGG CAACCGAAGC CTATGCGGCC TACGACGCCG GGCAGATGGG CATTGCCGCC
AGCAAGGCCG AGCAGGCGTT CCGGCAGCAG CCGAAGCAGG GCGCGTGGGC GCTGCTGTGG
GTGGCGGCGC TGGAGGCTCA GCAACAGCCC GAACAGGCCG ACGTCGCCAT CAGCACCGCG
CTGCAGCTGG GGGCACCCAA CGTCGAGGAA CTGCGCGCGC GCCGCGTGGT GCTGACGCGC
CAACGCGCGC TGCTGCTGGC CCAGCAAGCC TATCGATCGC TGTCCGCAGG TGATGATGCC
GCGGCCATTG GACATGCGCG CGACGCCGTG AAGCTGGCAC CGGAGGTGGC TTCATACCGG
TTGCTGCTGA TCACCGCGCA GCTGCAGGGC GATCAGCTGG CCGACGCTGA GCACAGTGCC
GATCAGGCAC TGCAGGTGGA TGCCAACGAC CTCAATGCAC GGGTCATGCG CGGTTACCTG
CGCCAGCGCC AGGGCAGCAC GTTGCGGGCC AATGAGGATT TCGACGCCGC GCTTGCCACG
CCGGGATCAA CCGCGCAGCA GCGCAACGTG CGCCTGCTCG CGGTGGATGC GGCACTGGCT
GCCGGCGATC GGGTGCGTGC GGCTGCACTG CTGGCACCGT TGCAGGCGCC AGTGCCAGCA
GATGAAAAAG ACGCACGGGC ACAGCTGCTG TTGCAGCAGG GCATCGAGCA GCGCGCCAAG
GCGATTAGCT CCAGTCGCGC GCTTCCCCGC ATCAGCGCCG AGGCCTACCC GGCACCGGTC
CAGCACTGCC AGTCCGGTGA CAGCAGCAAC GTCTGCGAGC TGATGCCGGC CGACCTTCAG
GGGGATGGCG GTGCCGCGCA GCGTGCCTAC GCTGCCTATG CACGCAGGGA CTACGCTGAC
GCCATCGGTG AGGCACGGCA GGCCGTACAA CTCGCACCGG AGGACGTGAA CCTGCAGGGC
CTGCTGACCA CCGCGCTGGC AGCGGGCAAC CGCGTCCAGC AGGACGAAGC GCGGCAGCGC
CTGGATGCGG CACTGGCGCA GCACCCTGAT GATGCGGGCG CGCTGATGCA GCGCGGCTAC
CTCAACCAGA AGGCACGCGA ACCGGCGCGC GCACTGGCCG ACTTCCATGC CGCCGAGGCC
ACCGGCAAGG CACCGAAAAG CGTAGTCCTC GACCAGGCCT ACGCCAGCGC CGCCAACGGC
GATCATCCAC AGGCGGTGAC GCTGCTGCGT AGCGCGATTG ATCGCGCCGA TGCCGGTGAG
CTGCCGCTGG ATGAGCACCA GCGATACAAC GTGCGCAATG CCATCGCCAA TTATTCGCGC
GAGTGGGGCG TGATCGCCTC GGCGGGTTTC CGGGGTGCGC GCCAGGCCGC AACCAATGTC
GGCGGTGCGG CGATCAGTAC GCCCGGCGAT TCGGTGTTCA GTACACTGGA GGCGTTCTGG
CGGCCCCCGG CCTTCAACGA CCAGCATGGC ACGCTGGAGC TCTACGCACG CCTGCTCAAC
ACGCTGTACG ACGAGGGTGG CACCTACGAG TCGATCCGTG CGGTGGATCC GTGCACCGGC
GAATCAACGC CGGATGCGCG TGCACGCGCC GAGCGCCTCA GTCATTCGCG TTCGACCACG
GGTTGGCCAT CCACCATCGC TTCCTTCGGC ATGCGCTATG CGTTCGGCCA GACCGGGCTC
AGTGCCGGTA TCGAGCGCAG ACAGTTCCTC GGCAGTGCCA CCCGCCAGGG CGAGGTCTAC
CCCGCATCGG CGGCCGTGCA ATGCCGCCTG CAGCTGGCGC TGAACCCACC ACTGGAAGCC
AGTACGCTGG CGCGCTACCG GTTGGCCAGT GGTTCCGGTG GATGGATGTC CTACCTGACC
TACGGCTACT ACCACGGCAC CGATCTGCGC ACCGATGTGA ACCAGTGGTG GATGGTCAGT
GGCTACGCGC AGGGGGGATA TACCTGGGAC GACAACGGTG CCAGCTTCAC CCTTGACGCG
CTCGATGCCA ACGGCACACC GGTGCGGCGC GTGGGCGAGG CCAATGGCCG TCTGCATCGC
GAACAGTGGT TCGCCGCTGG TGAACTACGT GCCGGCCGCA GTTTCCGCTT CGGTTCCGGG
CAGACCCACT GGGTGGTCAC GCCCTATGTG GTGATAGGTG CGGACTGGCT GGACCAGCGC
TCGCGCGTGC GCGACCTCCG CTACCCGCTG TTGCCGTCGC AGTCGTTCGC GCTCAACGAC
AGCCAGCGCA GCTGGTCACT CGGCGCGGGC CCGGGCGTGG GCGTGCGCTA CTGGTTCCGC
GAGGACCACT ACAACACGCC GCGCTCCTAC CTGGATCTGA CCGTGCAGTA CCGCTTTGCG
ATCGGCGGCG GTGATACGCA GCGCGCCAAG GGCCTGTTCG CCACCGCCAT CCTCTACTAC
TGA
|
|---|
| Protein sequence | MKTTLLSTVI AIALATATAP VLAQADAPLP LSGAAYRIAE QAFAAYERGD YPAAYQQSSE
AIRLRPDVVR LRLLQIYALQ KLGRGAEAQQ RARRALDAGM KDPALPALAA AVPKTTTGAA
RSAALPRASA TAADRNSRQA YLLATEAYAA YDAGQMGIAA SKAEQAFRQQ PKQGAWALLW
VAALEAQQQP EQADVAISTA LQLGAPNVEE LRARRVVLTR QRALLLAQQA YRSLSAGDDA
AAIGHARDAV KLAPEVASYR LLLITAQLQG DQLADAEHSA DQALQVDAND LNARVMRGYL
RQRQGSTLRA NEDFDAALAT PGSTAQQRNV RLLAVDAALA AGDRVRAAAL LAPLQAPVPA
DEKDARAQLL LQQGIEQRAK AISSSRALPR ISAEAYPAPV QHCQSGDSSN VCELMPADLQ
GDGGAAQRAY AAYARRDYAD AIGEARQAVQ LAPEDVNLQG LLTTALAAGN RVQQDEARQR
LDAALAQHPD DAGALMQRGY LNQKAREPAR ALADFHAAEA TGKAPKSVVL DQAYASAANG
DHPQAVTLLR SAIDRADAGE LPLDEHQRYN VRNAIANYSR EWGVIASAGF RGARQAATNV
GGAAISTPGD SVFSTLEAFW RPPAFNDQHG TLELYARLLN TLYDEGGTYE SIRAVDPCTG
ESTPDARARA ERLSHSRSTT GWPSTIASFG MRYAFGQTGL SAGIERRQFL GSATRQGEVY
PASAAVQCRL QLALNPPLEA STLARYRLAS GSGGWMSYLT YGYYHGTDLR TDVNQWWMVS
GYAQGGYTWD DNGASFTLDA LDANGTPVRR VGEANGRLHR EQWFAAGELR AGRSFRFGSG
QTHWVVTPYV VIGADWLDQR SRVRDLRYPL LPSQSFALND SQRSWSLGAG PGVGVRYWFR
EDHYNTPRSY LDLTVQYRFA IGGGDTQRAK GLFATAILYY
|
|---|
| |