Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ppha_2907 |
Symbol | |
ID | 6462047 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelodictyon phaeoclathratiforme BU-1 |
Kingdom | Bacteria |
Replicon accession | NC_011060 |
Strand | + |
Start bp | 2993175 |
End bp | 2993996 |
Gene Length | 822 bp |
Protein Length | 273 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 642729053 |
Product | Rhomboid family protein |
Protein accession | YP_002019667 |
Protein GI | 194337873 |
COG category | [R] General function prediction only |
COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACTACT CGAACCAGCC ATACAGTCCG GGGGGATTTC AGTTTATGCC CCCGGCAATT AAAACCATCA TTATTATCAA TGTTGCCGTT TTTCTGCTGC AATTCTTTAC ACCATTGGGT GCAATAATTC AAGCGCTCGG CGCACTCTGG CCAATCGGTT CCAGCAACTT CCAGCTCTGG CAACCGCTGA CCTACATGTT TCTGCACGGC AATGGCACCC ATCTCTTCTT CAACATGTTC GCCCTCTGGA TGTTCGGTGC TGAAATAGAA AATCAGTGGG GAACCCGGCA ATTCAACATC TACTACTTTA CCTGTGGTAT CGGCGCTGCA ATCATCAACC TTCTGGCAAC CATAGGCGAT CCCTATCCAA CCGTCGGCGC TTCCGGCGCC ATCTACGGCG TACTGCTCGC CTTCGGCATG ATGTTCCCCA ACCGCTATAT TTTTCTCTAT TTCCTCTTCC CCGTCAAGGC AAAATATTTT ATTGCCGGCT ACGCACTGAT CGAATTTATC TCCGGTTTCG GCAGCCGCGC CATGGGAAGC GGCAGCAACG TTGCCCATTT TGCACACCTC GGTGGTATGC TGATCGGCTT CATCTACATT ACCATCAAAC GAGCAGAGTG GTCGTTCTCC GGACTCTTCA GCAAAATCCG CCCCTCCGGC AAAAAGAGAA GCGGTCCGCG CCTCCATACC CGGAACAGCA TAACACCACC GGTCTCCGAA TCTGAAATCG ACGCCATACT CGACAAGATT TCCGAACGCG GCTATGGCTC ACTGACCGCA GAAGAGCGAC GCAAACTGCT CAAAGCAGGC GGAAAAAAGT GA
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Protein sequence | MNYSNQPYSP GGFQFMPPAI KTIIIINVAV FLLQFFTPLG AIIQALGALW PIGSSNFQLW QPLTYMFLHG NGTHLFFNMF ALWMFGAEIE NQWGTRQFNI YYFTCGIGAA IINLLATIGD PYPTVGASGA IYGVLLAFGM MFPNRYIFLY FLFPVKAKYF IAGYALIEFI SGFGSRAMGS GSNVAHFAHL GGMLIGFIYI TIKRAEWSFS GLFSKIRPSG KKRSGPRLHT RNSITPPVSE SEIDAILDKI SERGYGSLTA EERRKLLKAG GKK
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