| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_2905 |
|---|
| Symbol | |
|---|
| ID | 6462027 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | + |
|---|
| Start bp | 2990801 |
|---|
| End bp | 2991814 |
|---|
| Gene Length | 1014 bp |
|---|
| Protein Length | 337 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 642729051 |
|---|
| Product | aminodeoxychorismate lyase |
|---|
| Protein accession | YP_002019665 |
|---|
| Protein GI | 194337871 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1559] Predicted periplasmic solute-binding protein |
|---|
| TIGRFAM ID | [TIGR00247] conserved hypothetical protein, YceG family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCATCAA AAAAAACTTC CTCCCGTAAA CCGCTTCTTG GTGGAGCAGC TATGCTGCTG
ACGGCATTGG CATTTTTTTT ATTCCTGCCC GGACTCAATA CAGCATCAAA AGCCACCCGC
CTGACCGTTC ACAAAAAAAT GGGGGCCCGC GCCATTATTG ATGAACTGTA CCGTTCCCGT
TCGATTACCA GCAAATGGCC TGCACTGGTA ACCATCACGA TTATTCCAAG AGTGCACCGT
GTCAAACCGG GAAGATATAC CATTCCGCCC CGCATGTCGA ATTTCATGCT CATGTATTAT
CTGCATACGC ATCCGCAAGA TGAGGTACGC GTCACCCTTC CCGAAGGGAT TGATCTCAGA
AAAACCGCCC GCATCCTCTC CCGAAAACTT GACCTTGACT CTGCAGAGTT CATGATGGCG
ACAGCAGACC GCAATTTGCT CCTCAAAAAG GGGATAACGG CAAAAAATGC AGAAGGCTAC
CTGCTTCCCG GAACCTATGA CTTTGCCTGG GCATCCACGC CCGAAGAGGC GGTCGGATTT
CTTGTCGGAC GCTTCCGCCA TTTCTACACC GACAGCCTGA AGCAGGTAAC CGCCCAAAGA
GGACTGAACG AAACAGCCCT GCTGACCCTT GCCTCTATCG TTGAAGCCGA AACCCCGCTT
GACCAGGAAA AAAATCTTGT CGCCAGCGTC TACCTTAACC GCCTGAAAAA AAATATGCGG
CTGCAAGCCG ATCCAACAGT ACAATATGCC CTTGGAGGAG CTGCCCGCCG CCTCTATTAC
AAAGATCTGG CAGCCGGTTC CCCCTACAAC ACCTATCGCC ATAACGGACT CCCTCCAGGA
CCTATCTGCA ACCCCGGAGC AGCATCAATC CTTGCCGTAC TGAACCCTGC GAACAGCAAT
TTCCTCTACT TTGTCGCCAC GGGAAAGGGA GGGCATTACT TTGCCGAATC ACTGACAGAG
CACAATGCAA ACATCAAAAA GTACAAACTC ACCCTCAGCA ATACCGGACA CTGA
|
|---|
| Protein sequence | MASKKTSSRK PLLGGAAMLL TALAFFLFLP GLNTASKATR LTVHKKMGAR AIIDELYRSR
SITSKWPALV TITIIPRVHR VKPGRYTIPP RMSNFMLMYY LHTHPQDEVR VTLPEGIDLR
KTARILSRKL DLDSAEFMMA TADRNLLLKK GITAKNAEGY LLPGTYDFAW ASTPEEAVGF
LVGRFRHFYT DSLKQVTAQR GLNETALLTL ASIVEAETPL DQEKNLVASV YLNRLKKNMR
LQADPTVQYA LGGAARRLYY KDLAAGSPYN TYRHNGLPPG PICNPGAASI LAVLNPANSN
FLYFVATGKG GHYFAESLTE HNANIKKYKL TLSNTGH
|
|---|
| |