| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_2740 |
|---|
| Symbol | |
|---|
| ID | 6463598 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | + |
|---|
| Start bp | 2828761 |
|---|
| End bp | 2829534 |
|---|
| Gene Length | 774 bp |
|---|
| Protein Length | 257 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 642728896 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_002019511 |
|---|
| Protein GI | 194337717 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAACA TCGTTATCAC AGGAAGCAGC AGAGGAATTG GCCTGGGTCT TGCTCATGCA
TTTCTCTCAA AAGGCTGCCG TGTCATGATC AGCAGCAGCA ACAGCAGCAA CCTTGACAAA
GCACTGAATG AGCTGGCCGA GCAGCATGGC TCCGAACATA TCTCGGCAAA AACATGTGAT
GTTGCCAATT ACCAGGAGGT TCAGGATCTT TGGGACCATG CGCAAAAATC GATAGGCCAG
GTAGATATCT GGATAAACAA CGCCGGTATT GCCCACCCTT TGCTTCCGTT CTGGAAGCTT
GATATGACAC AGATCGGGCA TACCCTTGAT GTCAATCTTG CCGGAACAAT AAATGGATCG
CATGTGGCTA TCAGAGGAAT GATCGAACAG GGGTCGGGAT ACCTGTACAA TCTTGAAGGC
CAGGGTGCCG ACGGGGGAAT AATTCACGGA ATGGGTGTTT TTGGAACGTC CAAGGCGGCT
GTACACTATT TCTCGAAATC CCTTATCGAA GAAACCCGGT CTTTGAAGAT AAAGGTAGGT
ACAATCATAC CGGGAATCAT ACGTACGGAG CTGCAAGCTA AAACCTCACA ACAAACCGAT
GCTGGCAGGC TTTTTCTTTC GTTGCTTGGC GAAAATGTTC GGGAAGCAAC GGAAGACCTT
GCAAAAAGAA TTCTTGCAAA CAATACACAT GGGGTCTGCA TCAACCGCAT GACGCCACCC
GACATGATCG GAAAAATCGC AACATTACCT ATCAATTTTT TGTTAGGCAG GTGA
|
|---|
| Protein sequence | MKNIVITGSS RGIGLGLAHA FLSKGCRVMI SSSNSSNLDK ALNELAEQHG SEHISAKTCD
VANYQEVQDL WDHAQKSIGQ VDIWINNAGI AHPLLPFWKL DMTQIGHTLD VNLAGTINGS
HVAIRGMIEQ GSGYLYNLEG QGADGGIIHG MGVFGTSKAA VHYFSKSLIE ETRSLKIKVG
TIIPGIIRTE LQAKTSQQTD AGRLFLSLLG ENVREATEDL AKRILANNTH GVCINRMTPP
DMIGKIATLP INFLLGR
|
|---|
| |