Gene Ppha_2453 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPpha_2453 
Symbol 
ID6462413 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePelodictyon phaeoclathratiforme BU-1 
KingdomBacteria 
Replicon accessionNC_011060 
Strand- 
Start bp2537216 
End bp2537635 
Gene Length420 bp 
Protein Length139 aa 
Translation table11 
GC content34% 
IMG OID642728633 
ProductCRISPR-associated protein, Csm2 family 
Protein accessionYP_002019255 
Protein GI194337461 
COG category[L] Replication, recombination and repair 
COG ID[COG1421] Uncharacterized protein predicted to be involved in DNA repair 
TIGRFAM ID[TIGR01870] CRISPR-associated protein, Csm2 family 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.228228 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAACAA TTCAAGAAAT TAAGGAAGCA ACTTCAAAGT TTAATAGCTC CTTGTACGAA 
GGATTGACAA TTGATGATGC CATTGAGTAT GCAAATGTTA TTGCAAGAGA TCTGCAGAAG 
GTAAAAACAC ATCAGTTAAG ACGGTTTTTT TCTGCAATAA AAAATATACA AAATAAAGTT 
GTTGATCTTA AGGATAACGA TCTTTTCCCA GCAGGGGAAT ATGCGGAACT ACAAATGCTG 
AGACCTCAAC TTGCAAATGC TGTGGGGCGT TTACACGGAT CAGAAAAGAT CGCTATGCAA 
AATTTGTTAG ACATTTTACG GCCTGTTATC AAGACTGTAA AAAAGAATAA TGATTTTACT 
CGTTTTGTAA ATTTTTTTGA ATCAATTATT GCCTATCACA AGGCTTACGC AAAAGAATAA
 
Protein sequence
MKTIQEIKEA TSKFNSSLYE GLTIDDAIEY ANVIARDLQK VKTHQLRRFF SAIKNIQNKV 
VDLKDNDLFP AGEYAELQML RPQLANAVGR LHGSEKIAMQ NLLDILRPVI KTVKKNNDFT 
RFVNFFESII AYHKAYAKE