| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_2209 |
|---|
| Symbol | |
|---|
| ID | 6461032 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | - |
|---|
| Start bp | 2291393 |
|---|
| End bp | 2292634 |
|---|
| Gene Length | 1242 bp |
|---|
| Protein Length | 413 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 642728400 |
|---|
| Product | putative transcriptional regulator |
|---|
| Protein accession | YP_002019024 |
|---|
| Protein GI | 194337230 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2865] Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0000825903 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGAAAG CTGAATTATT CGAAATGGTT GCCAATGGTG AGAATTCAGG TGTTGAATTT
AAACGTGATG ATATCCGGCC TGAGCAGTTG GCAAAAGAGA TTGTTGCCTT TGCAAATGTT
CAGGGTGGCC GGATTTTCCT TGGCGTTGAG GATAATGGAG AGTTTACCGG CCTCCAGCGT
GCTCATGCCC AGGAGTGGAT TTTGAATGCA TTCAGGGACA AGGTACACCC GCAAATCATT
CCTTACTATG AAGAGATTGA GCTGGAAAAG GGTTTACGAA TCGGGGTGAT AACGATTGCT
GCCGGAATAT CAAAACCCTA CGTGGTGCGC CACAACAACC GCGAAGAGGT CTATATCCGC
ATGGGCGACC GATCTGAACT TGCTTCACGT GAACAGCAAC TTCGCCTGTT TGAAAGTTGC
GGGTTGCTTC ATGTTGAGGT TTTGCCAGTT GCGGGCACCT CATTGTCTAC TATTGATAAA
AGCAGGCTTA CCTATTATCT GCAAGACATA ATCAAGGACC CTGAGATTCC ACAAACCGAT
AGTGAGTGGG TTGAACGCCT TATCGGTCTG GGATTGATGG CCGATGATGG CATGGGAAAC
AGCGTATGTT CGATAGCAGG ATTGATCTGC TTTGGCATAA AGCCCCGCCG TTTTCTTCGA
CAGGCAGGAT TGCGAATGAT GGCTTTTCGG GGGAATGATA AAGAGTACCA GGCATTGCTC
GATGTTGTGC TTGATGCACC GTTGGTCGGG CGATGGCAAC GCTCTGCATC GGGGCAAAAA
GAGTTGATTG ATGAAGGTCT GATTGAAAAA TTTTCTTCTC TTATAGAACC TTTTATCACT
CAGGAGGCAT CGGGGATTGA TAAGAATATG CGGCGGGAAA AGAGCTGGTT TTATCCATGG
GAAGCCATTC GAGAAACAGT CGTCAATGCT CTGGCTCACC GTGACTGGAC AAGGTCGGTC
GATATTGAGG TGACAAACTA CTCTGATCGA CTGGAGGTTA TCAGCCCGGG GAAACTCCAG
AATTCAATGA CGGTCAGCAA AATGGTTGCC GGACAACGCT CTCCACGCAA TACCCTGATC
ATGGAAATTC TGCGTGACTA TGGGTATGTT GATGCAAGAG GTATGGGAGT GCGCACCAAG
GTTATTCCCC TGATGCGTAC GTTCAATCAG GCAGAACCGG TATTTGAGGC TACAGAGGAT
TATTTGAAAA CGATACTTTA TCGGAAAAGA GCGGGCGAGT AG
|
|---|
| Protein sequence | MLKAELFEMV ANGENSGVEF KRDDIRPEQL AKEIVAFANV QGGRIFLGVE DNGEFTGLQR
AHAQEWILNA FRDKVHPQII PYYEEIELEK GLRIGVITIA AGISKPYVVR HNNREEVYIR
MGDRSELASR EQQLRLFESC GLLHVEVLPV AGTSLSTIDK SRLTYYLQDI IKDPEIPQTD
SEWVERLIGL GLMADDGMGN SVCSIAGLIC FGIKPRRFLR QAGLRMMAFR GNDKEYQALL
DVVLDAPLVG RWQRSASGQK ELIDEGLIEK FSSLIEPFIT QEASGIDKNM RREKSWFYPW
EAIRETVVNA LAHRDWTRSV DIEVTNYSDR LEVISPGKLQ NSMTVSKMVA GQRSPRNTLI
MEILRDYGYV DARGMGVRTK VIPLMRTFNQ AEPVFEATED YLKTILYRKR AGE
|
|---|
| |