Gene Ppha_2209 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPpha_2209 
Symbol 
ID6461032 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePelodictyon phaeoclathratiforme BU-1 
KingdomBacteria 
Replicon accessionNC_011060 
Strand
Start bp2291393 
End bp2292634 
Gene Length1242 bp 
Protein Length413 aa 
Translation table11 
GC content48% 
IMG OID642728400 
Productputative transcriptional regulator 
Protein accessionYP_002019024 
Protein GI194337230 
COG category[K] Transcription 
COG ID[COG2865] Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000825903 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTGAAAG CTGAATTATT CGAAATGGTT GCCAATGGTG AGAATTCAGG TGTTGAATTT 
AAACGTGATG ATATCCGGCC TGAGCAGTTG GCAAAAGAGA TTGTTGCCTT TGCAAATGTT
CAGGGTGGCC GGATTTTCCT TGGCGTTGAG GATAATGGAG AGTTTACCGG CCTCCAGCGT
GCTCATGCCC AGGAGTGGAT TTTGAATGCA TTCAGGGACA AGGTACACCC GCAAATCATT
CCTTACTATG AAGAGATTGA GCTGGAAAAG GGTTTACGAA TCGGGGTGAT AACGATTGCT
GCCGGAATAT CAAAACCCTA CGTGGTGCGC CACAACAACC GCGAAGAGGT CTATATCCGC
ATGGGCGACC GATCTGAACT TGCTTCACGT GAACAGCAAC TTCGCCTGTT TGAAAGTTGC
GGGTTGCTTC ATGTTGAGGT TTTGCCAGTT GCGGGCACCT CATTGTCTAC TATTGATAAA
AGCAGGCTTA CCTATTATCT GCAAGACATA ATCAAGGACC CTGAGATTCC ACAAACCGAT
AGTGAGTGGG TTGAACGCCT TATCGGTCTG GGATTGATGG CCGATGATGG CATGGGAAAC
AGCGTATGTT CGATAGCAGG ATTGATCTGC TTTGGCATAA AGCCCCGCCG TTTTCTTCGA
CAGGCAGGAT TGCGAATGAT GGCTTTTCGG GGGAATGATA AAGAGTACCA GGCATTGCTC
GATGTTGTGC TTGATGCACC GTTGGTCGGG CGATGGCAAC GCTCTGCATC GGGGCAAAAA
GAGTTGATTG ATGAAGGTCT GATTGAAAAA TTTTCTTCTC TTATAGAACC TTTTATCACT
CAGGAGGCAT CGGGGATTGA TAAGAATATG CGGCGGGAAA AGAGCTGGTT TTATCCATGG
GAAGCCATTC GAGAAACAGT CGTCAATGCT CTGGCTCACC GTGACTGGAC AAGGTCGGTC
GATATTGAGG TGACAAACTA CTCTGATCGA CTGGAGGTTA TCAGCCCGGG GAAACTCCAG
AATTCAATGA CGGTCAGCAA AATGGTTGCC GGACAACGCT CTCCACGCAA TACCCTGATC
ATGGAAATTC TGCGTGACTA TGGGTATGTT GATGCAAGAG GTATGGGAGT GCGCACCAAG
GTTATTCCCC TGATGCGTAC GTTCAATCAG GCAGAACCGG TATTTGAGGC TACAGAGGAT
TATTTGAAAA CGATACTTTA TCGGAAAAGA GCGGGCGAGT AG
 
Protein sequence
MLKAELFEMV ANGENSGVEF KRDDIRPEQL AKEIVAFANV QGGRIFLGVE DNGEFTGLQR 
AHAQEWILNA FRDKVHPQII PYYEEIELEK GLRIGVITIA AGISKPYVVR HNNREEVYIR
MGDRSELASR EQQLRLFESC GLLHVEVLPV AGTSLSTIDK SRLTYYLQDI IKDPEIPQTD
SEWVERLIGL GLMADDGMGN SVCSIAGLIC FGIKPRRFLR QAGLRMMAFR GNDKEYQALL
DVVLDAPLVG RWQRSASGQK ELIDEGLIEK FSSLIEPFIT QEASGIDKNM RREKSWFYPW
EAIRETVVNA LAHRDWTRSV DIEVTNYSDR LEVISPGKLQ NSMTVSKMVA GQRSPRNTLI
MEILRDYGYV DARGMGVRTK VIPLMRTFNQ AEPVFEATED YLKTILYRKR AGE