| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_2165 |
|---|
| Symbol | |
|---|
| ID | 6462123 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | - |
|---|
| Start bp | 2247500 |
|---|
| End bp | 2249080 |
|---|
| Gene Length | 1581 bp |
|---|
| Protein Length | 526 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 642728361 |
|---|
| Product | protein of unknown function DUF92 transmembrane |
|---|
| Protein accession | YP_002018985 |
|---|
| Protein GI | 194337191 |
|---|
| COG category | [I] Lipid transport and metabolism
[S] Function unknown |
|---|
| COG ID | [COG0170] Dolichol kinase
[COG1836] Predicted membrane protein |
|---|
| TIGRFAM ID | [TIGR00297] conserved hypothetical protein TIGR00297 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.937448 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGAATC TCCAAGCTCC ATTGCCTCAG GATTTTCCAG CCTTTTTCCT GACGCTCTGC
CTTATCCTGC TTTTTGTTGT TCTTGCCGAA CTGTTGACAA GGAAATTCAG TGTCAGCGCT
CTTGTTGTCA GGAAAATTGT TCACCTCTCG ATGGGTGTTG TTATCTTTTT CATACCGGCC
TATTTCCATT CCAATTTTTA TCCTGCGCTT GCAGCATCCA TTTTTCTCTG TTTTAATGGA
TTGAACATTC GATTTCAATG GTTTGGTTCT CTGCTTGCCC TGCCTGAAGA GAAGAGCGCT
CAGTCACCGG CAGTAAAAAG TTATGGTTCG CTTCTTTTCC CTCTGGTTTT TCTGCTTCAG
CTTCTTTTTC TCTGGGAGTC TCATAAATGG ATACTACAGA CCTCTATGCT TGTCATGGGC
GTCAGTGACT CTCTTGCGGC GCTTGTTGGC AGTTCAGTTG GTAAAAAGCA CATTGAGCAT
ATGACTAAAA ACCCCAAGAC TTTCGAGGGA TCGCTCACCA TGTTTGTCAG CAGCTTTTTG
CTTCTCAGCG CAGCTCTTAT GGTATTCAGC GAGAATTTCA CAGGAGGGTT GGCCGGAAAG
TCGGTGTTGA TGCTTTTAGC GCTTGCGCTT CTTCTTACTC TTGTAGCCAC GGCTGTTGAG
GCGCTTTTAT CCCATGGTCT CGATAATTTT TTTATTCCGG TATCTATCGC TTATGTGCTC
TATGTTCTTG AGATGAATCA TACCATTCTT CTTGAGCGTT TTCTTCTTGG TGGACTTTTT
GCTTTTCTTT TGGCTGTTTT TTCAATCAAG GTCAAATTTC TTAATAACAG CGGGGCAACG
GCCACATTTT TGCTGGGAAC AACTATTTTT GGTATCGGAG GGATAGAGTG GACAGTTCCG
CTTCTAACCT TTTATCTGTT GTCGTCGGTC TTGTCGAAAT TGGGCAAGAA GCGGAAGGCG
AAATTTGATC TGGTCTTTGA AAAAGGGTCG CAGCGGGATG CCGGTCAGGT TTATGCCAAC
GGGGGAATAG CCTGGATTCT GATGATTGCT TTTTCGTTGA CCAATGATCC TGCAATCTTT
TTTGCCTATC TCGGAACGCT TGCTGCAGTA CAGGCTGATA CCTGGGCGAC GGAAATCGGT
ACGATGTGGC CGAATCCAAA AGCCTGGTTA GTGACTACTT TCAGAGAGGT GCCTGTTGGA
ACTTCTGGTG GTGTTTCTGT ACCAGGTACT TCAGGGGCCT TTCTTGGTTC CCTCTTTATC
TGTGCCAGTG CGATGGTGAT CAATGTCCGT TGGTTGATGG ATTTCGGTGT CCTGCAGTCT
TTTCTTCTTA TTGGATTTTC AGGGCTTCTT GCCAGCCTGG TTGACAGTTT TTTCGGAGCA
ACTGTTCAGG CTCAGTATTT TGATCCAATC CGTGAAAAGG TAACGGAGAG AACCCATAGT
ATGTCGCCTG ATGGTGTTCT GGTTGAAAAC AGGTTGCTTA AAGGCACCCC TCTGGTCAAT
AATGATCTGG TCAATACGCT TTGTGCCCTT TCCGGTTCGG CGTTAGCCTA TGTGGTTATC
CAGAATGTTC ATCTGTTTTA A
|
|---|
| Protein sequence | MLNLQAPLPQ DFPAFFLTLC LILLFVVLAE LLTRKFSVSA LVVRKIVHLS MGVVIFFIPA
YFHSNFYPAL AASIFLCFNG LNIRFQWFGS LLALPEEKSA QSPAVKSYGS LLFPLVFLLQ
LLFLWESHKW ILQTSMLVMG VSDSLAALVG SSVGKKHIEH MTKNPKTFEG SLTMFVSSFL
LLSAALMVFS ENFTGGLAGK SVLMLLALAL LLTLVATAVE ALLSHGLDNF FIPVSIAYVL
YVLEMNHTIL LERFLLGGLF AFLLAVFSIK VKFLNNSGAT ATFLLGTTIF GIGGIEWTVP
LLTFYLLSSV LSKLGKKRKA KFDLVFEKGS QRDAGQVYAN GGIAWILMIA FSLTNDPAIF
FAYLGTLAAV QADTWATEIG TMWPNPKAWL VTTFREVPVG TSGGVSVPGT SGAFLGSLFI
CASAMVINVR WLMDFGVLQS FLLIGFSGLL ASLVDSFFGA TVQAQYFDPI REKVTERTHS
MSPDGVLVEN RLLKGTPLVN NDLVNTLCAL SGSALAYVVI QNVHLF
|
|---|
| |