Gene Ppha_2123 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPpha_2123 
Symbol 
ID6462707 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePelodictyon phaeoclathratiforme BU-1 
KingdomBacteria 
Replicon accessionNC_011060 
Strand
Start bp2203713 
End bp2204186 
Gene Length474 bp 
Protein Length157 aa 
Translation table11 
GC content47% 
IMG OID642728322 
Productputative transcriptional regulator 
Protein accessionYP_002018946 
Protein GI194337152 
COG category[K] Transcription 
COG ID[COG2865] Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAGAGA TGCGCCAGGG TAATGTATCA CGCCGCCGCA ACCCATTGAT TGCCGACCTT 
TTCCGCCGTA TCCAGATGGT TGAAGGGTGG GGGCGTGGAA TGCCGCTCAT TTTTGAAAAT
GCACCGAGCG TGCAGTTTCG CCAGATTGCC GGTTTGTTCA TAGCAAGTTT TGAAAGGCCC
TCTTTTGTTG AGGATTTCGT ACAGGGCGAA GTTGATACTA CAGGAAAGAC TGTCGATAAG
ACTGTCGATA AGATTGAGCT GACCGATAAG GAAAAAGATT TGTGTGATTT GGTTCGCCAT
CATCCAATCA TCACTCAAAA AGGGATGGCA GATCAACTTG GTCTTACCGA ACGAGGTATT
CGTTACCTGA CCGACAAGCT TCAGAAGCAA GGTGTTCTTC AAAAAATCGG GGGCAAAAAG
TCTGGAAAAT GGGTGGTTAT TGATTCGACA AAATCAGGGA GTGCTGGGGT ATGA
 
Protein sequence
MEEMRQGNVS RRRNPLIADL FRRIQMVEGW GRGMPLIFEN APSVQFRQIA GLFIASFERP 
SFVEDFVQGE VDTTGKTVDK TVDKIELTDK EKDLCDLVRH HPIITQKGMA DQLGLTERGI
RYLTDKLQKQ GVLQKIGGKK SGKWVVIDST KSGSAGV