| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_2022 |
|---|
| Symbol | |
|---|
| ID | 6462913 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | - |
|---|
| Start bp | 2114243 |
|---|
| End bp | 2115364 |
|---|
| Gene Length | 1122 bp |
|---|
| Protein Length | 373 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | 642728220 |
|---|
| Product | Extracellular ligand-binding receptor |
|---|
| Protein accession | YP_002018850 |
|---|
| Protein GI | 194337056 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.882154 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGAAAGT TTAAAGTATT AGCTATCATT ATCATTATTT CCGCTTATTT ATTTGCTTGT
GGAAATAGTA AGAAAGAAAC TATTAACATT GGATGTTCAT TGCCCCTAAC TGGTGAAGGA
GCCAATTATG GAAGATCTGT AAAAGAAGGA GTTGATTTAG CTATTGAAGA AATAAATCAA
AGTGAAATGT TTGATTTGCC TTTGAAAGTT ATTTATGAAG ATGATAAAAT GGATCCAAGG
GAAGGTGTAA ATGCGATTAA TAAGCTTATC ACTGCGGACA ATGTACCAAT AATAATTGGT
CCTTTTGGGT CTTCAATAAC ATTAGCTGTT GCTCCAATAG CAAACAAAAA CAAAGTTGTT
TTACTGGGAG CTAGTGCCAC TGCTGATAAT ATTAAAGATG CAGGCGATTA TATTTTCAGA
ATCACTCCTC CTAACTCGAA GCAAGGTAAT GATGTTGCAA GTTTCTGTTT CAATTCACTT
AATTCAAAAA AAGCAGCAAT TATTTATCAA ACAAATGATT ATGGTACTAC CCTAAAAACT
GCTTTTGAAT CAGAATATCT TAAACTTGGC GGCGAAGTTC TCATTGTTGA AGGAGTTGAT
TTAGGAAACA AAGATTTTAA AACTCAGATT TTAAAAATTA AATCTAAGCA GGTTGATGTT
GTTTTCTTTC CCCTTCATGT TGCAGAATCT GGAAATTTTC TTAAACAATC CAAAGAACTT
GGATTGAATG TAAAATTTAT TAGTTGTGAT GGAGCTATGG TAGATGACCT TCTTAAGCTT
GCAGGAAATG CGGCAGAAGG TACATATTAT ACCTCCTTAG CATTAGCTTA TGGTATGAAT
GATAGCCTAA TAAACAGTTT TAACACAAAT TTTAAAAAGA AATACAATAA AGAGCCTGAT
GTTTATGCAG CATACTACTA TGAAGTAACT TATATCTTAG CACATGCTCT AAAAAAAGCT
AATGGCAACA TTGGTCAAAT AAAAGAAATT CTTTATTCAA TAAATGGGGA AAATGCCTAT
AATGGAATAA CTGGTTTAAC AAGTTTTGAT ACTTATGGAG AGGTGGACAA ATCATTTTCA
ATATATGTAG TTAGTAATAA TAAATTCAGT CTTTTCAAAT GA
|
|---|
| Protein sequence | MRKFKVLAII IIISAYLFAC GNSKKETINI GCSLPLTGEG ANYGRSVKEG VDLAIEEINQ
SEMFDLPLKV IYEDDKMDPR EGVNAINKLI TADNVPIIIG PFGSSITLAV APIANKNKVV
LLGASATADN IKDAGDYIFR ITPPNSKQGN DVASFCFNSL NSKKAAIIYQ TNDYGTTLKT
AFESEYLKLG GEVLIVEGVD LGNKDFKTQI LKIKSKQVDV VFFPLHVAES GNFLKQSKEL
GLNVKFISCD GAMVDDLLKL AGNAAEGTYY TSLALAYGMN DSLINSFNTN FKKKYNKEPD
VYAAYYYEVT YILAHALKKA NGNIGQIKEI LYSINGENAY NGITGLTSFD TYGEVDKSFS
IYVVSNNKFS LFK
|
|---|
| |