| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_2016 |
|---|
| Symbol | |
|---|
| ID | 6462928 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | - |
|---|
| Start bp | 2107402 |
|---|
| End bp | 2108286 |
|---|
| Gene Length | 885 bp |
|---|
| Protein Length | 294 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 30% |
|---|
| IMG OID | 642728214 |
|---|
| Product | inner-membrane translocator |
|---|
| Protein accession | YP_002018844 |
|---|
| Protein GI | 194337050 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.143 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATATGC TAGCACAAAT ATGTTTTAAT ATTTTAGTTT CATTTTCTAT ATATTTGCTT
ATATCGACTT CGTTTTCAAT AATATATAAT TCAGTTAAGT TTTTCCATTT TGCACATGGA
GCTATTATAA GTTTAGGAGC ATATTTTAGT TACTTTTTTT ATCTACAGCT TAATTTGCCT
TTATTTATTG CAATTCCTTT TACAGTATTT TTATCAATTT TTGTGTCATT GTTAATAGAA
TTATTAATTT ACAGACCGTT AAAGAGAAGA AAAGTCTCAT CACTTTCATT ACTTATAGTT
TCGCTTGGGA TTTATATAGT ATTACAAAAT GTCATATCAT TAATTTGGAG TGACGGTGTT
AAGAGCATAG TCAAAAATGA AATAGAAACA GGAACAGAAA TATTCGGGGC TCACATAACT
AATATACAAA TTGTAACCAT AGGGTTAAGT TGTATCATAT TTCTTATTAA AATGTTATTC
CTCCAATTCC ATAAAATAGG ACGAAATATT AGAGCAATCT CGACAAATAC TGAATTGGCT
AATATCATGG GTATTAATTC CAATAGAATA ATTTTATGGT CTTTTGCGAT AGGGAGTGGT
ATAGCTTCAA TTATTGGAGT TTTGGTTGCT GCGGATACTG GTTTGACACC AACAATGGGA
TTTAGTTTGT TGCTTTATGG TGTTGTTGTA ATGATTATTA GCGGCATTGG CAGTAATTGG
GGGCTAATCG GTGGTGCCTT ATTATTGGCC ACTATACAGC ATCTAACTGC ATTTTTTCTC
GATGGCAAAT GGATAGATGC AATCACCTAT TCTATTTTAA TATTATTTTT AATTTGGAAA
CCTCTTGGTT TTAGTGGTAA ACGCCTCAAA AAAACAGAGA TATAA
|
|---|
| Protein sequence | MNMLAQICFN ILVSFSIYLL ISTSFSIIYN SVKFFHFAHG AIISLGAYFS YFFYLQLNLP
LFIAIPFTVF LSIFVSLLIE LLIYRPLKRR KVSSLSLLIV SLGIYIVLQN VISLIWSDGV
KSIVKNEIET GTEIFGAHIT NIQIVTIGLS CIIFLIKMLF LQFHKIGRNI RAISTNTELA
NIMGINSNRI ILWSFAIGSG IASIIGVLVA ADTGLTPTMG FSLLLYGVVV MIISGIGSNW
GLIGGALLLA TIQHLTAFFL DGKWIDAITY SILILFLIWK PLGFSGKRLK KTEI
|
|---|
| |