| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1799 |
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| Symbol | |
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| ID | 6461839 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | + |
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| Start bp | 1904175 |
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| End bp | 1907627 |
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| Gene Length | 3453 bp |
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| Protein Length | 1150 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 642728014 |
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| Product | PAS/PAC sensor signal transduction histidine kinase |
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| Protein accession | YP_002018648 |
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| Protein GI | 194336854 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCGTAA TATATACAGA CAATAACGCC GATAACTCCT ACTCTGAGCT TAAAGAGACA
AGGGATGCAC TCGCTGCCAG CAATACCCAT CATCGCAACC TTATTGACTA CATGCAAAAT
GGGTATGCTT ACTGCCGCGT AATATTCGAA GAAGGAGTTC CTGTTGATTT TATCCATGAG
GAAGTCAATT CCGGTTATGA GAAAATGACC GGCCTGAAAA ACGTTGTTGG AAAGAGAGCG
ACCGAGGTCT TTCCCGGCAT CAACAACACC TTTCCTGAAT TTATCGAGAA ACATATAACC
GTAGCCCAGA CAGGAATTTC TAATCGGTTT GAATTGTATC TGGAACCATT GAGGTCATGG
TTTGACCTGA CAGTTTACTG CCCTCAAAAA GGCTACTTCG TCTCTATAAT TGATGACATC
ACACAACGAA AAATAGCTGA AGAGGCTCAG AAGGAGAGCG AAGAACGGTT CAGAAAACTG
TTTGAGAACC ATTCAGCACC TATGTTAATC ATCGATCCCG AAACAGGCTA TATCGTTGAT
GCCAATAACG CCTCTGCAAT TTTTTATGGC TGGTCAATCG ATGAACTACG CCAAATGCAT
ATGCAGCAAA TCAGCACCCT GTCTCCTGAT AAAATTAAAG CAGAGATGGC GAAAAGCGTC
TTGAAGACAC AAAACCAGTT TTCTTTTCGC CATCGCAAAG CTGACGGGTC ATTGCGAGAA
GTCGATATTT TCAGTAATGC AATTGAAATT CATGGTAAAA TCCTTCTCTA TTCAATTATT
CATGATATTT CTGAACGCAA GAGATACGAA TCACTGACCG CATTCCGTCT TCGCCTGCTT
GAAATGGCAG AAACCCATTC CGCCGAAGAG TTACTGTTGG CAGCAATGGA CAAAAAGGAG
GAGGATCAAT CGTTCAACAG ACTGTTTAAT GTCTTTCCTC AACCAATGCT TCTTCTTGAT
CCCGATGGCG GAATCATTTT AGCTAATAAT GCATTCAAAA CTCAATTAAA CAATCACTCT
GAAATAACTC CAGGCTCGAA TATTTTTGAT TCTATCTCTA TTGAACTTGC TCTTGAACAG
AGGAACGTAA TTGCGGAGGT TCTTTTTACT GGCGAACGTA TCTTTTACGA AAAAGAATCT
CATGGGCGTA TATACCGCCA TACTGTCTAC CCTATCCCAA ATAGCGATGG TGAAATAACA
AAGCTGCTGA TGTTCATTAT GGACATTACA AACCTCATTT TAACAGAAAA AGAGCTTCTT
GTTGAAAGAG TACGTTACCG GAACCTCTTC AATAATCATT TGAATGGTTT TGCTTATTGC
AGAATGATAT TTAAAGATAA TTGTCCAGTA GATTTCATTC CTGAAGTGGT AAATCTGAAT
TTCAAAAGAT TAACAGGATT ACAAATCATT GAGGGACAAA GTATATCTAT GCATATTCCG
GGTATAAGCA TATCTAATCC GGAACTATTT GAAAAAGTTG GGCGTGTATC ACTGAATGGA
ATTGCAGAAA GATTCGATTT ATATATAAAC ACATTGGATA AATGGCTTGA TATTACAGCA
TACAGCCACC AGAAAGGGTA CTTTGTCATC GTGTTGACTC CCATGAAAAC CATAAATACC
GGTAACTGGG AGTGGAATCT TGAAAATGGA GAGATGATAT GGTCCGATAA ATTACGGATG
CTTTATGGAC TTGACTTGCA CAGTAGTAAC CCTTCCTACC AGACTTGGTT ACAAGCCATT
GTTCCTATGG AAAGGATAAA TACAGAAAAG ACAATGCGGG ATGCAATTCA TAATGAAAAT
ACATTTGAAA CAATATACAA TATCTGTGAT CAAAATGGCA CCGTAAGACA AATGATGACT
CACGGTTTCC CTGTAAAAGA TGAAAACGGA CTTGTAAAAA GATATATGGG TGTAAGTATT
GATATTACAG AATATAAAAA TGATGACACT ACCCATCTCA TCAATACACA CAATTTCACA
TCTCTTTTGA ATTCTGCTGT GGAGCCACTA TGCTCTTTGG CAATCGATGG AACAATTCTT
GATGCAAACA AAGATTTTCT CGATATCTAC TCATTAGAAT CAAAAAGCGT TATAGGACAA
AACTTTCATT CTCTCTTTCC TCGTCAACTT CAGGAAGAAC GAAAAACAAA ATTTGAACTT
ATCTTTTATA CAAGAGAACC AGTTCATTTC AAGGATCTGT TTCATTCAAA TCTTCATGAA
ACAGATCGGA ATGAAGAATA TATCTATCAT ATTTCCGCAT ATCCTATTTA TGGAATCAAT
GAAGATATCA ACTCTATAGC TGTCTTTATT ACAGACTCCA ACAAAAACAA TAAAGCAGAA
AAATCAAGAA GACAATTAGA CAAACAATAC CAGACTCTCA TAGCAGCGTC ACCTGACAGC
ATTATAACAA CTGATCTTGA TGGAATTATC AGCAGTGTCT CTGATATTGG TCTTGAAATA
TTTGGAGCCA ATAATAAAGC TGATGTTATA GGCATGTCTT TTTCAAATAT TGTATACTCA
GATAACATTA AAATAATCAA TGAAATATTT GATGTAACAT TACGCGAAGG TTTGATACAA
AACAAAGAGA TCGTGCTAAA AAAGAAAAAC AATACCGTAT ATTCGGCAGA AATCAGTGCG
GCATTAATTC AGGATTATAA TGGAGCTCCA TCATCGTATA TGATGATTAT TCGTGATATT
TCACAAAGAA AAATAATTGA AAGCGAACTT TTTCATGCCA AAAGATTAAT AAGTCTTGGT
GAAATGGCAT CTGGTATTGC ACATGAAATT TATCAACCGA TTAATAATAT TGGATTAATC
GTTGATAAGA TTTTGATGGA TGCGTCAAAA CATAATTGGG CATGTGAAAA AGAAATTAAA
ATCAAATCCG AAAAAATATT TGAAAACATA TTAAGAATTC AGACTATAAT AGATAACATC
AGATCCTTTT CAAGTACAGA TAATAATTAT ATATCTTCAG TTATAAATAT CAATAAAAGC
ATTCGAAACG CTCTCTTGAT GGTATCCGAG CAGTGTAAGC ACAAATCTAT AATACTTGAT
TTCAAAGCTG AAGAAGAGCG ATTCTCAGTT ACTGGAAACA TTTACAAATT CGAACAGGTA
ATTCTGAATT TAATCAAAAA CTCTATTGAT GCTCTTGAAG AAAAGAAACA AATCTATAAT
ACGGGCTTTG AAATGAAAAT ATTTGTTAGA TCATTTTACA AAAACAATTC GATAATAGTA
ACAGTAGAAG ACAATGGGAT AGGTGTAAGT GAAAGCAATA TCGAATATAT AATGCATCCA
TTTTATACAA CAAAAGAATC TGGAAAAGGT ACAGGACTTG GACTTTCGAT TAGTTATGGC
ATTATAAAAG AGATGAATGG CGATATTAAA ATAAAAAGTG TTCCAATGAA CGGAACATGC
ATTATTATTA CTCTTCCGTC AAATAGCAAC TGA
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| Protein sequence | MPVIYTDNNA DNSYSELKET RDALAASNTH HRNLIDYMQN GYAYCRVIFE EGVPVDFIHE
EVNSGYEKMT GLKNVVGKRA TEVFPGINNT FPEFIEKHIT VAQTGISNRF ELYLEPLRSW
FDLTVYCPQK GYFVSIIDDI TQRKIAEEAQ KESEERFRKL FENHSAPMLI IDPETGYIVD
ANNASAIFYG WSIDELRQMH MQQISTLSPD KIKAEMAKSV LKTQNQFSFR HRKADGSLRE
VDIFSNAIEI HGKILLYSII HDISERKRYE SLTAFRLRLL EMAETHSAEE LLLAAMDKKE
EDQSFNRLFN VFPQPMLLLD PDGGIILANN AFKTQLNNHS EITPGSNIFD SISIELALEQ
RNVIAEVLFT GERIFYEKES HGRIYRHTVY PIPNSDGEIT KLLMFIMDIT NLILTEKELL
VERVRYRNLF NNHLNGFAYC RMIFKDNCPV DFIPEVVNLN FKRLTGLQII EGQSISMHIP
GISISNPELF EKVGRVSLNG IAERFDLYIN TLDKWLDITA YSHQKGYFVI VLTPMKTINT
GNWEWNLENG EMIWSDKLRM LYGLDLHSSN PSYQTWLQAI VPMERINTEK TMRDAIHNEN
TFETIYNICD QNGTVRQMMT HGFPVKDENG LVKRYMGVSI DITEYKNDDT THLINTHNFT
SLLNSAVEPL CSLAIDGTIL DANKDFLDIY SLESKSVIGQ NFHSLFPRQL QEERKTKFEL
IFYTREPVHF KDLFHSNLHE TDRNEEYIYH ISAYPIYGIN EDINSIAVFI TDSNKNNKAE
KSRRQLDKQY QTLIAASPDS IITTDLDGII SSVSDIGLEI FGANNKADVI GMSFSNIVYS
DNIKIINEIF DVTLREGLIQ NKEIVLKKKN NTVYSAEISA ALIQDYNGAP SSYMMIIRDI
SQRKIIESEL FHAKRLISLG EMASGIAHEI YQPINNIGLI VDKILMDASK HNWACEKEIK
IKSEKIFENI LRIQTIIDNI RSFSSTDNNY ISSVININKS IRNALLMVSE QCKHKSIILD
FKAEEERFSV TGNIYKFEQV ILNLIKNSID ALEEKKQIYN TGFEMKIFVR SFYKNNSIIV
TVEDNGIGVS ESNIEYIMHP FYTTKESGKG TGLGLSISYG IIKEMNGDIK IKSVPMNGTC
IIITLPSNSN
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