| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1785 |
|---|
| Symbol | |
|---|
| ID | 6461226 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | - |
|---|
| Start bp | 1885211 |
|---|
| End bp | 1886041 |
|---|
| Gene Length | 831 bp |
|---|
| Protein Length | 276 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 642727997 |
|---|
| Product | signal peptidase I |
|---|
| Protein accession | YP_002018634 |
|---|
| Protein GI | 194336840 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0681] Signal peptidase I |
|---|
| TIGRFAM ID | [TIGR02227] signal peptidase I, bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAATACTC AGAAAGGTAA GCCGGAAAAA AAACATTCAC GGGAGTGGTT TGAAGCTCTG
GTTATTGCTG CGATATTTGC GACCGTTCTT CGTGTTTTTG TTGTTGAATC TTACCGTATT
CCAACGGGCT CCATGGAGAA TACGCTGCTT GCAGGGGATT TTCTTTTTGT GAACAAATAT
GTCTATGGGC CAAAAGTGCC CTTTACCGAT ATACGGCTTC CTGGAGTTGA CAAGGTGGAA
CGAGGCGATA TTATTGTTTT CAAGTTTCCC AAAGATCGTT CACTGAACTA TATCAAGCGA
TGTGTTGCCA TCAGTGGTGA TACCCTTGAG ATTCATGACC AGCAACTTTC GATCAACAGA
AAACCGGTTC CTCTTCCGGA ACATGGACAG TTTATCGGAG TCAAGGCTCC TGCAGGAGAG
GGTGATTATA TGATTTTTCC ACAGTCATCA ACCTTCAACA AGGATAACTA CGGCCCGATA
CGCATTCCCC GCAAGGGAGA TGTCGTGCAA CTGACAGCGG CAACCTATCC GCTTTACAGT
TCGCTTGTTG CCGATGAAGG ACATGATGTG AGTCTGCAGG GCAGGGAGGT CTTTGTTGAC
GGTTCTCCAG CTCAGAAGTA TACCGTTCAG GACAACTACT ATTTTGCAAT GGGTGATAAT
CGCGACAATA GTCTCGACAG TCGTTTCTGG GGCTTTTTAT CGGAAAAGGA TCTTGTCGGT
CAGGCGTTGG TGGTTTATTG GTCATGGGAC CCGGATCTTT CATTGCTTAC AGATCCCATC
GGTAAAGTTA GCTCAATACG ATGGACGCGT CCAGGGTTGC TCATTCATTG A
|
|---|
| Protein sequence | MNTQKGKPEK KHSREWFEAL VIAAIFATVL RVFVVESYRI PTGSMENTLL AGDFLFVNKY
VYGPKVPFTD IRLPGVDKVE RGDIIVFKFP KDRSLNYIKR CVAISGDTLE IHDQQLSINR
KPVPLPEHGQ FIGVKAPAGE GDYMIFPQSS TFNKDNYGPI RIPRKGDVVQ LTAATYPLYS
SLVADEGHDV SLQGREVFVD GSPAQKYTVQ DNYYFAMGDN RDNSLDSRFW GFLSEKDLVG
QALVVYWSWD PDLSLLTDPI GKVSSIRWTR PGLLIH
|
|---|
| |