| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1666 |
|---|
| Symbol | |
|---|
| ID | 6463123 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | + |
|---|
| Start bp | 1771327 |
|---|
| End bp | 1772973 |
|---|
| Gene Length | 1647 bp |
|---|
| Protein Length | 548 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 642727883 |
|---|
| Product | transposase IS4 family protein |
|---|
| Protein accession | YP_002018520 |
|---|
| Protein GI | 194336726 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG5421] Transposase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.475975 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTACGTAG ATTCCAGCAA GACCACCATT AATGGCAAAA CCTACCAGCG CCATCTTTTT
CGTGAATCCT ATCGTGAAGA TGGGAAGGTG AAAAATCGCA CGTTGGGCAA GATCTCAAAA
TGTTCGGAAG GAGAGATTGC CGCCATTAAA CTTGCCCTGA AGTACAAAGA CAATTTGGCA
GCCCTGTTGC ATATTGAGGA TGTTGAACTA CATGAGGGGC TTCGTGTTGG TGTGGTATAT
GCACTCAAAA CGCTTGCCGA GAGGCTTGGT ATCAGCAAGA CGCTTGGTAA TACCCGCCAG
GGAAAGCTTG CATTGTGGCA GATTATGGCT CGATTGATCG GGCAGGGTTC ACGCCTCGGT
GCGGTCAGGA TGGCAGCACG TTATGGCGCC TGTGATGTCC TTGAATTAGA ACGCTTTACA
GAAGATGACC TCTATGCCAA CCTGGCTTGG CTGACGGAGC ATCAGGAGCG CATTGAGCAG
CAGTTATTCA AGCACAATTC AGCGGGTGCT GGCCCGGAAT TGCTGCTCTA TGATGTTACC
TCATCATATC TTGAAGGGAT GGAGAATGTG CTTGCTGCTT TTGGTTACAA CCGGGATGGC
AAAAAGGGGA AGAAGCAAAT CGTTATTGGC TTGTTGTGTA CCGCAGATGG CGATCCGGTT
GCCGTCCGGG TCTTTGCAGG CAATACCGGC GACAAGTCAA CCGTTGCAGA GCAGATTCGC
ACCATTGCCA ACACTTTCGG CATTGAAGAG GTAACGATGG TTGGCGACAA GGGTATGATC
AAAACGCCGC AGGCCAAAGA GTTGACCGAT GCGGGATTTC ATTACATCAC CTCACTCTCG
AAACCCGAAA TCAGAACCCT GCTGAAGGCA GAGGTACTGC AAATGGATTT TTTCGATTCA
GAGCTGTATG AGGTTGAAAA TAAAACCGAT GGCGTTCGAT ATGTGCTGAG AAGAAATCCG
GTTCGCGAGG CCGAGATGGC AAAGAATCGC CAGGAACGGG TGAAAAAAAT CCAGCGTTAT
GTGGACGAGA AAAACAGCTA TCTCGCTGGT TCCCTCAAGC GCGACAAGGA TGTTGCAGAA
CGCTCTCTTC AGAAAAAGAT CAGCCAGTAC AAGCTCAATG ATGTGCTGGA ACTGACCCAT
CAGGAGAGGG TGTTCACGGT AACGGTCAAT GAAGAAATCC TGAAAGGAGT CGCTCTGCTG
GACGGCTGTT ATGTGATCAA AACCGATGTC AAGAAAGAGC TGCTTTCGAC TGAACAAGTC
CATGATCGGT ACAAAGATCT GGCCAAAGTG GAGCATGCAT TTCGGACGTT CAAGCAAAGT
CATCTTGAAA TCAGACCGGT TCATGTGCGA ACCGAAGCGA GCACTCGTGG CCATGTCTTT
GCCGTTATGC TTGCCTATAA AATCGAGAGG CAGTTATCAG AACTCTGGAA AAAATGTGAA
TGCACGGTAC CGGAAGGAAT TGATGAACTT GGCGCAATAC GCAGCACAAT CGTCACCCTC
AAAGGATCAA GCTGTCAGAA AATTCCCCAG TCGAAAGGAT TGGCTGCTGA GTTACTTGCC
GCTGCCGGGA TTACCCTTCC TTCGATTATT GATGCCAAAA ATGTTGATGT AGTCACAAGG
AAAAAACTGG CCCCGAAGCG TAAATAA
|
|---|
| Protein sequence | MYVDSSKTTI NGKTYQRHLF RESYREDGKV KNRTLGKISK CSEGEIAAIK LALKYKDNLA
ALLHIEDVEL HEGLRVGVVY ALKTLAERLG ISKTLGNTRQ GKLALWQIMA RLIGQGSRLG
AVRMAARYGA CDVLELERFT EDDLYANLAW LTEHQERIEQ QLFKHNSAGA GPELLLYDVT
SSYLEGMENV LAAFGYNRDG KKGKKQIVIG LLCTADGDPV AVRVFAGNTG DKSTVAEQIR
TIANTFGIEE VTMVGDKGMI KTPQAKELTD AGFHYITSLS KPEIRTLLKA EVLQMDFFDS
ELYEVENKTD GVRYVLRRNP VREAEMAKNR QERVKKIQRY VDEKNSYLAG SLKRDKDVAE
RSLQKKISQY KLNDVLELTH QERVFTVTVN EEILKGVALL DGCYVIKTDV KKELLSTEQV
HDRYKDLAKV EHAFRTFKQS HLEIRPVHVR TEASTRGHVF AVMLAYKIER QLSELWKKCE
CTVPEGIDEL GAIRSTIVTL KGSSCQKIPQ SKGLAAELLA AAGITLPSII DAKNVDVVTR
KKLAPKRK
|
|---|
| |