Gene Ppha_1660 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPpha_1660 
Symbol 
ID6463139 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePelodictyon phaeoclathratiforme BU-1 
KingdomBacteria 
Replicon accessionNC_011060 
Strand+ 
Start bp1758864 
End bp1759904 
Gene Length1041 bp 
Protein Length346 aa 
Translation table11 
GC content38% 
IMG OID642727877 
ProductCRISPR-associated protein, Csd2 family 
Protein accessionYP_002018514 
Protein GI194336720 
COG category[L] Replication, recombination and repair 
COG ID[COG3649] Uncharacterized protein predicted to be involved in DNA repair 
TIGRFAM ID[TIGR01595] CRISPR-associated protein, CT1132 family
[TIGR02589] CRISPR-associated protein, Csd2 family 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTCAGA CCATTGAAAA CCGTTATGAG TTTGTACTGC TTTTTGATGT TAAAAATGGG 
AACCCAAATG GTGACCCTGA TGCCGGAAAT CTACCGCGTA TTGATCCTGA GACTGGGCAC 
GGAATTACAA CGGATGTATG CTTGAAAAGA AAAATCAGAA ATTATGTAGA ACTATTGAAA 
AAAAATGAAT CTCCTTACGA GATCCATGTG CGAGAAGGCG AGTTTCTTTC TGAACACCAT 
AAAAGAGCGC ATAATGCTTT GACTGATGAA AAAATATACG TATTCGTTCC TGCGGATTTA 
AGAGGTGAGT TAAGTTCATT TGCGGAATAT CCTGAAGGAG TCGGTTTTGA AAACGACGCA 
ATTTATTTCC AGTTGAGTTC GGATATTGAC AAAGTAAAGA AAGATGTGGA AAAACTAAAA 
AATATTACTG ATGCTTCAAA AGCGAAAATA AAAGAATTGT TTGTTGACGG AAAATCAGTT 
ATCGCAAAGA AGTGGATGTG TAAAAACTTT TTTGATGTTC GTACTTTTGG AGCAGTTATG 
TCGACAGGTG ATAAAACCTG CGGACAAGTA CGCGGTCCTG TTCAATTGAG TTTTTCGAGA 
AGTATCGAGC CAATCGTCGG ATTAGAGATT GCAATGTCAA GAACAGCAGC AGTAAACGTG 
GATAAATCGA GTGATAAAGG ACTTGGTGCA AGAAAATCCA TTGTACCATA TGGTTTGTAC 
AGGGTTCATG GATTTATTTC TGCTCCTTTA GCAAAACAAA CAGGTTTCAC AGAAGACGAT 
CTTGAATTGC TATGGTCTGC ATTGATTAAT ATGTTTGATC ATGATCGCTC TGCATCTCGT 
GGTGAGATGG CATCCCGTCA ACTTTTCGTT TTTCAACACG AGTCTGAGTT GGGGAACACT 
CCTGCTCACA AGTTATTTGA AAGAATTAAA GTTGAACGAA AACCTCTTTC AAATGGTCCT 
GCAAGATTTT ATGAAGATTA TCAGATTACT ATCGATGAAA CTAATCTAGG AAAGGTAACT 
CTGTTAAGAA AAATTGCATA A
 
Protein sequence
MTQTIENRYE FVLLFDVKNG NPNGDPDAGN LPRIDPETGH GITTDVCLKR KIRNYVELLK 
KNESPYEIHV REGEFLSEHH KRAHNALTDE KIYVFVPADL RGELSSFAEY PEGVGFENDA 
IYFQLSSDID KVKKDVEKLK NITDASKAKI KELFVDGKSV IAKKWMCKNF FDVRTFGAVM 
STGDKTCGQV RGPVQLSFSR SIEPIVGLEI AMSRTAAVNV DKSSDKGLGA RKSIVPYGLY 
RVHGFISAPL AKQTGFTEDD LELLWSALIN MFDHDRSASR GEMASRQLFV FQHESELGNT 
PAHKLFERIK VERKPLSNGP ARFYEDYQIT IDETNLGKVT LLRKIA