Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ppha_1654 |
Symbol | |
ID | 6463151 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelodictyon phaeoclathratiforme BU-1 |
Kingdom | Bacteria |
Replicon accession | NC_011060 |
Strand | + |
Start bp | 1749068 |
End bp | 1752415 |
Gene Length | 3348 bp |
Protein Length | 1115 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 642727871 |
Product | PAS/PAC sensor hybrid histidine kinase |
Protein accession | YP_002018508 |
Protein GI | 194336714 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCTCAAA ACGCTTCACC TGTTGATGAT TTTTCTGAAT TGCGCTCCCG AGCTGAAGAG CGCCTGCAAA AAAGTCAATT GACAAACATG CATCTCTCCT CTTCACCTGA GGAGATGCTT CGTTTGATTC ATGAACTGGC AGTTCACCAG ATCGAACTTG AAATACAGCA ACAAGAACTG AGAGAGTCGA GAAAAGAGCT GGAAAAAAGT CTTGAACGAT ACACCGATCT GTATGATTTC GCCCCATTGG GATACCTGAC CCTTGCACCG GACGGTGAGA TCATCGAATT GAACCTCACC GCTGCAACGA TTCTTGATAT CTCACGATCC CGGTTGCGCG GAAAACAGTT GAACAAGTTT ATTATTCCCT CAGACCGCAC GACGTTTGCC ACACTGCTAA AGAATGTGTT CAGCCACAAA GAGCCAACCT CTTGTGAAGT TGAACTTTCC GCATCTGACA AGGATACTTG CAGCCAGAAA ACCGTACGCA TTGAAGCGCG CATCAATGAT AATGAAAAGA GCTGCCGCGC CATGCTCTCG GATATTACCA TGCATAAAAG GATGGCTCAG GCCATGCTTG TCACCAATGA ACGCCAGCGA CTTATTGTTG ATGCAACCCA TTCCGGCAGT TGGGAGTGGG ATTTACAGAG CAACCACACC ATATGGTCGG AAGAGCTCTG GCGTCTGCTT GGCCTGGAAC CCTTTTCCTG CCAGGCAACC TACGAGGTAT GGAAATTGTC CATGCTGGAT GAAGAGAGAG ATCAGGTTGA ACAAATTGTT TTGAACGCAG TTGAACGTGG GCAGGAGTTT ACTGTTGAAT GGCGTGTCCG CTCTACTTCC GGCCAGGAGC GCTGGGTGAT GTCACAAGGC ACGCCCTTCA AAGATAGTGA TGGAGTGGTC AATCGATACG TTGGAATCAC AATAGATATT ACTGAGCTGA AAATGGCTCA GGAAAAGGGA AAAAAAGAAC AACAGTTCAG TAAAAGCATT ATCAACAGTA TTCCCGGCAG TTTTTATATC ATCAACACAG AGGGTACCTA TAGCGGGTGG AATAGCTTTC AGCGAGATCA CGTTGTCGGA AAGCCGGAAA GTGAGATGCA AGATGTCGCG GCCATTTCAA CGATTCATCC GGAAGATCGG GAGTTTGTTC AGGAAAAAAT GGTGAACGTG CTTGAATATG GCCTCGAAGA AAATGTGGAA GCAAGAGTAC TGCTTCATGG AGGGCCCGAA TTTCGGTGGT TCCTGATGAC AGGCCGCCGA ATAGTCGTGG ATGGCAATCC CTTCCTGATC GGAACCGGTA TTGACATTAC AGAACAGAAA AAAATCGACG ATCTGCAACG TTTTCTCTCT TCTGCAAGCT ATGGTTCAGA GCAAGAACCA TTCTTTAATG CCCTTGCCCG ATACATCGCC AATAGCCTTG AGATGAATTT TGTCCGTATT GACAGCCTGG ATGGTGACGG CTTGACGGCC AGAACGCTTG CAGTCTGGTG TGACGATCAT TTTGAGGATA ATGTCGTCTA TTCCCTGAAC GACACTCCCT GTGGGGATGT CGTCGGCAAG GATGTCTGTT GTTTTCAGGA AAAGGTGTGT CAACTCTTTC CACACGATCA GGTACTCAAA GATCTTCGGG CAGAAAGTTA TGTCGGGGTA ACGCTTTGGG ACCATAAAAA GCGACCAATC GGCCTCATTG CCGTTATTGG ACGCCAACCC CTTGAAAAAA AACAGTTTGC AGAAACCGCA CTTAAAATAC TATCCGTGCG TGCTGCCAGC GAACTGGAGC GTCTGCAGAG CGAGAACGCT TTACAGGCAA GTGAGAAAAA GTACCGTGAA CTGTTTGAGA GCGTCCCGAT CGGGCTCTAC CAATCGACCA TGAAGGGAAA AATAATTGCA GCAAACCAGC ATTGCCTTGA GATTGCCAAA TGCAGGGAAT CAGAGAGAGA TGTTTGGTTT TCCCAGGATA CCCGACAATC CTACGTTCAC CCGGAAGATG GCGAAAGAAT CCGGGAACTT CTTTTAAAAA AGGGCCATAT CAACAATTTT GAGGCCGATT TTCTCCTCAT GGATGGTACC ATCGCCACAC TCAGCAACAC AGCAAAAATT GTCTTGAATG AACAGGGTGC GCCTGATTTT ATCGCCGGAT CGTTGATTGA TGTCACGGAA CTCAAACGGA GTGAGGCAGA AAAAGCAAAA CTTGAAGATC AGCTTCACCA ATCCCAGAAA ATGGAGATGG TAGGAAGACT TGCCGGCGGA ATCGCCCATG ATTTCAACAA TATGCTTACG CTTATTCTCG GCCACACCGA AATGGCCCTT GAACATTTTG ATCCATCCCA GACAGTCTAT ACCGATCTTG AGGCCATCCG GGAAGCCGCA ACCCGTTCTG CCGATCTGAC CCGACAGCTC CTTGCCTTCG CCCGCAAACA GATCATCATG CCTGAAGTTC TTGAGCTGGA CAACTTGATT GGAAAAATGC TTCCCATGCT GCGACGCCTC ATTGGTGAAA ATATCAAGCT GATATGGATC CCGAACAGCA AAAACTCCCA TCTCAAAATC GATCCATCGC AGATAGACCA GATTGTTGTC AACCTCTGTG TCAACGCCCG GGATGCCATA ACCAATAATG GCACAATCAC AATCGAAACA GGCCATCACC TCGCCCATAA GAGCAGCGAC CCCGAACAGC CAGCTTGTGA ATCGGTGACG CTTTCTGTCA GTGATGATGG ATGCGGGATT GAGAAGAACA ATCTTGACCA TATTTTTGAA CCATTTTTCA CCACGAAAGA GCCCGGAAAA GGTACCGGTC TTGGCCTGTC AACGGTCTAT GGGATTGTTA AACAGAACAA CGGCACCATC TCATGCTTGA GCGAACTGAA AAAAGGAACG ACCTTCACCA TTCATCTGCC TCTCTACAAT GCGCCACCAC CAGCGGCTGA GACCACACCG ACGAGTACAT TGATGTATAC AGGCCATCAA ACCATCCTGC TTGTAGAGGA CGAACTGCCT ATTCTCAAAC TCTGCCAGCT TATGCTTGAA CACAATGGCT ACAAAGTTCT GGCAGCCGCA ACAGCCGCAG AAGCCATAAA GAGAGCGGAA AACTTCAGTG GAACGATTGA TTTGCTGGTA ACAGATGTTA TCATGCCGGA GATGAATGGA TCCGAACTCT CAAAAAAACT GCTTTCTGTT CGTCCGGAGC TTAAAATACT CTTCATGTCC GGCTACACCG CAGATATCAT TGCCCAAGAC AATGTTTTGG AACGTGGAGT TAACTTTTTG CAGAAGCCTG TTACCATGAA ATCACTGACC CTGGCTCTCT ATCATATTTT TAACCCCACT CCACTGCAAG AGCCTTGA
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Protein sequence | MSQNASPVDD FSELRSRAEE RLQKSQLTNM HLSSSPEEML RLIHELAVHQ IELEIQQQEL RESRKELEKS LERYTDLYDF APLGYLTLAP DGEIIELNLT AATILDISRS RLRGKQLNKF IIPSDRTTFA TLLKNVFSHK EPTSCEVELS ASDKDTCSQK TVRIEARIND NEKSCRAMLS DITMHKRMAQ AMLVTNERQR LIVDATHSGS WEWDLQSNHT IWSEELWRLL GLEPFSCQAT YEVWKLSMLD EERDQVEQIV LNAVERGQEF TVEWRVRSTS GQERWVMSQG TPFKDSDGVV NRYVGITIDI TELKMAQEKG KKEQQFSKSI INSIPGSFYI INTEGTYSGW NSFQRDHVVG KPESEMQDVA AISTIHPEDR EFVQEKMVNV LEYGLEENVE ARVLLHGGPE FRWFLMTGRR IVVDGNPFLI GTGIDITEQK KIDDLQRFLS SASYGSEQEP FFNALARYIA NSLEMNFVRI DSLDGDGLTA RTLAVWCDDH FEDNVVYSLN DTPCGDVVGK DVCCFQEKVC QLFPHDQVLK DLRAESYVGV TLWDHKKRPI GLIAVIGRQP LEKKQFAETA LKILSVRAAS ELERLQSENA LQASEKKYRE LFESVPIGLY QSTMKGKIIA ANQHCLEIAK CRESERDVWF SQDTRQSYVH PEDGERIREL LLKKGHINNF EADFLLMDGT IATLSNTAKI VLNEQGAPDF IAGSLIDVTE LKRSEAEKAK LEDQLHQSQK MEMVGRLAGG IAHDFNNMLT LILGHTEMAL EHFDPSQTVY TDLEAIREAA TRSADLTRQL LAFARKQIIM PEVLELDNLI GKMLPMLRRL IGENIKLIWI PNSKNSHLKI DPSQIDQIVV NLCVNARDAI TNNGTITIET GHHLAHKSSD PEQPACESVT LSVSDDGCGI EKNNLDHIFE PFFTTKEPGK GTGLGLSTVY GIVKQNNGTI SCLSELKKGT TFTIHLPLYN APPPAAETTP TSTLMYTGHQ TILLVEDELP ILKLCQLMLE HNGYKVLAAA TAAEAIKRAE NFSGTIDLLV TDVIMPEMNG SELSKKLLSV RPELKILFMS GYTADIIAQD NVLERGVNFL QKPVTMKSLT LALYHIFNPT PLQEP
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