Gene Ppha_1654 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPpha_1654 
Symbol 
ID6463151 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePelodictyon phaeoclathratiforme BU-1 
KingdomBacteria 
Replicon accessionNC_011060 
Strand
Start bp1749068 
End bp1752415 
Gene Length3348 bp 
Protein Length1115 aa 
Translation table11 
GC content48% 
IMG OID642727871 
ProductPAS/PAC sensor hybrid histidine kinase 
Protein accessionYP_002018508 
Protein GI194336714 
COG category[T] Signal transduction mechanisms 
COG ID[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTCAAA ACGCTTCACC TGTTGATGAT TTTTCTGAAT TGCGCTCCCG AGCTGAAGAG 
CGCCTGCAAA AAAGTCAATT GACAAACATG CATCTCTCCT CTTCACCTGA GGAGATGCTT
CGTTTGATTC ATGAACTGGC AGTTCACCAG ATCGAACTTG AAATACAGCA ACAAGAACTG
AGAGAGTCGA GAAAAGAGCT GGAAAAAAGT CTTGAACGAT ACACCGATCT GTATGATTTC
GCCCCATTGG GATACCTGAC CCTTGCACCG GACGGTGAGA TCATCGAATT GAACCTCACC
GCTGCAACGA TTCTTGATAT CTCACGATCC CGGTTGCGCG GAAAACAGTT GAACAAGTTT
ATTATTCCCT CAGACCGCAC GACGTTTGCC ACACTGCTAA AGAATGTGTT CAGCCACAAA
GAGCCAACCT CTTGTGAAGT TGAACTTTCC GCATCTGACA AGGATACTTG CAGCCAGAAA
ACCGTACGCA TTGAAGCGCG CATCAATGAT AATGAAAAGA GCTGCCGCGC CATGCTCTCG
GATATTACCA TGCATAAAAG GATGGCTCAG GCCATGCTTG TCACCAATGA ACGCCAGCGA
CTTATTGTTG ATGCAACCCA TTCCGGCAGT TGGGAGTGGG ATTTACAGAG CAACCACACC
ATATGGTCGG AAGAGCTCTG GCGTCTGCTT GGCCTGGAAC CCTTTTCCTG CCAGGCAACC
TACGAGGTAT GGAAATTGTC CATGCTGGAT GAAGAGAGAG ATCAGGTTGA ACAAATTGTT
TTGAACGCAG TTGAACGTGG GCAGGAGTTT ACTGTTGAAT GGCGTGTCCG CTCTACTTCC
GGCCAGGAGC GCTGGGTGAT GTCACAAGGC ACGCCCTTCA AAGATAGTGA TGGAGTGGTC
AATCGATACG TTGGAATCAC AATAGATATT ACTGAGCTGA AAATGGCTCA GGAAAAGGGA
AAAAAAGAAC AACAGTTCAG TAAAAGCATT ATCAACAGTA TTCCCGGCAG TTTTTATATC
ATCAACACAG AGGGTACCTA TAGCGGGTGG AATAGCTTTC AGCGAGATCA CGTTGTCGGA
AAGCCGGAAA GTGAGATGCA AGATGTCGCG GCCATTTCAA CGATTCATCC GGAAGATCGG
GAGTTTGTTC AGGAAAAAAT GGTGAACGTG CTTGAATATG GCCTCGAAGA AAATGTGGAA
GCAAGAGTAC TGCTTCATGG AGGGCCCGAA TTTCGGTGGT TCCTGATGAC AGGCCGCCGA
ATAGTCGTGG ATGGCAATCC CTTCCTGATC GGAACCGGTA TTGACATTAC AGAACAGAAA
AAAATCGACG ATCTGCAACG TTTTCTCTCT TCTGCAAGCT ATGGTTCAGA GCAAGAACCA
TTCTTTAATG CCCTTGCCCG ATACATCGCC AATAGCCTTG AGATGAATTT TGTCCGTATT
GACAGCCTGG ATGGTGACGG CTTGACGGCC AGAACGCTTG CAGTCTGGTG TGACGATCAT
TTTGAGGATA ATGTCGTCTA TTCCCTGAAC GACACTCCCT GTGGGGATGT CGTCGGCAAG
GATGTCTGTT GTTTTCAGGA AAAGGTGTGT CAACTCTTTC CACACGATCA GGTACTCAAA
GATCTTCGGG CAGAAAGTTA TGTCGGGGTA ACGCTTTGGG ACCATAAAAA GCGACCAATC
GGCCTCATTG CCGTTATTGG ACGCCAACCC CTTGAAAAAA AACAGTTTGC AGAAACCGCA
CTTAAAATAC TATCCGTGCG TGCTGCCAGC GAACTGGAGC GTCTGCAGAG CGAGAACGCT
TTACAGGCAA GTGAGAAAAA GTACCGTGAA CTGTTTGAGA GCGTCCCGAT CGGGCTCTAC
CAATCGACCA TGAAGGGAAA AATAATTGCA GCAAACCAGC ATTGCCTTGA GATTGCCAAA
TGCAGGGAAT CAGAGAGAGA TGTTTGGTTT TCCCAGGATA CCCGACAATC CTACGTTCAC
CCGGAAGATG GCGAAAGAAT CCGGGAACTT CTTTTAAAAA AGGGCCATAT CAACAATTTT
GAGGCCGATT TTCTCCTCAT GGATGGTACC ATCGCCACAC TCAGCAACAC AGCAAAAATT
GTCTTGAATG AACAGGGTGC GCCTGATTTT ATCGCCGGAT CGTTGATTGA TGTCACGGAA
CTCAAACGGA GTGAGGCAGA AAAAGCAAAA CTTGAAGATC AGCTTCACCA ATCCCAGAAA
ATGGAGATGG TAGGAAGACT TGCCGGCGGA ATCGCCCATG ATTTCAACAA TATGCTTACG
CTTATTCTCG GCCACACCGA AATGGCCCTT GAACATTTTG ATCCATCCCA GACAGTCTAT
ACCGATCTTG AGGCCATCCG GGAAGCCGCA ACCCGTTCTG CCGATCTGAC CCGACAGCTC
CTTGCCTTCG CCCGCAAACA GATCATCATG CCTGAAGTTC TTGAGCTGGA CAACTTGATT
GGAAAAATGC TTCCCATGCT GCGACGCCTC ATTGGTGAAA ATATCAAGCT GATATGGATC
CCGAACAGCA AAAACTCCCA TCTCAAAATC GATCCATCGC AGATAGACCA GATTGTTGTC
AACCTCTGTG TCAACGCCCG GGATGCCATA ACCAATAATG GCACAATCAC AATCGAAACA
GGCCATCACC TCGCCCATAA GAGCAGCGAC CCCGAACAGC CAGCTTGTGA ATCGGTGACG
CTTTCTGTCA GTGATGATGG ATGCGGGATT GAGAAGAACA ATCTTGACCA TATTTTTGAA
CCATTTTTCA CCACGAAAGA GCCCGGAAAA GGTACCGGTC TTGGCCTGTC AACGGTCTAT
GGGATTGTTA AACAGAACAA CGGCACCATC TCATGCTTGA GCGAACTGAA AAAAGGAACG
ACCTTCACCA TTCATCTGCC TCTCTACAAT GCGCCACCAC CAGCGGCTGA GACCACACCG
ACGAGTACAT TGATGTATAC AGGCCATCAA ACCATCCTGC TTGTAGAGGA CGAACTGCCT
ATTCTCAAAC TCTGCCAGCT TATGCTTGAA CACAATGGCT ACAAAGTTCT GGCAGCCGCA
ACAGCCGCAG AAGCCATAAA GAGAGCGGAA AACTTCAGTG GAACGATTGA TTTGCTGGTA
ACAGATGTTA TCATGCCGGA GATGAATGGA TCCGAACTCT CAAAAAAACT GCTTTCTGTT
CGTCCGGAGC TTAAAATACT CTTCATGTCC GGCTACACCG CAGATATCAT TGCCCAAGAC
AATGTTTTGG AACGTGGAGT TAACTTTTTG CAGAAGCCTG TTACCATGAA ATCACTGACC
CTGGCTCTCT ATCATATTTT TAACCCCACT CCACTGCAAG AGCCTTGA
 
Protein sequence
MSQNASPVDD FSELRSRAEE RLQKSQLTNM HLSSSPEEML RLIHELAVHQ IELEIQQQEL 
RESRKELEKS LERYTDLYDF APLGYLTLAP DGEIIELNLT AATILDISRS RLRGKQLNKF
IIPSDRTTFA TLLKNVFSHK EPTSCEVELS ASDKDTCSQK TVRIEARIND NEKSCRAMLS
DITMHKRMAQ AMLVTNERQR LIVDATHSGS WEWDLQSNHT IWSEELWRLL GLEPFSCQAT
YEVWKLSMLD EERDQVEQIV LNAVERGQEF TVEWRVRSTS GQERWVMSQG TPFKDSDGVV
NRYVGITIDI TELKMAQEKG KKEQQFSKSI INSIPGSFYI INTEGTYSGW NSFQRDHVVG
KPESEMQDVA AISTIHPEDR EFVQEKMVNV LEYGLEENVE ARVLLHGGPE FRWFLMTGRR
IVVDGNPFLI GTGIDITEQK KIDDLQRFLS SASYGSEQEP FFNALARYIA NSLEMNFVRI
DSLDGDGLTA RTLAVWCDDH FEDNVVYSLN DTPCGDVVGK DVCCFQEKVC QLFPHDQVLK
DLRAESYVGV TLWDHKKRPI GLIAVIGRQP LEKKQFAETA LKILSVRAAS ELERLQSENA
LQASEKKYRE LFESVPIGLY QSTMKGKIIA ANQHCLEIAK CRESERDVWF SQDTRQSYVH
PEDGERIREL LLKKGHINNF EADFLLMDGT IATLSNTAKI VLNEQGAPDF IAGSLIDVTE
LKRSEAEKAK LEDQLHQSQK MEMVGRLAGG IAHDFNNMLT LILGHTEMAL EHFDPSQTVY
TDLEAIREAA TRSADLTRQL LAFARKQIIM PEVLELDNLI GKMLPMLRRL IGENIKLIWI
PNSKNSHLKI DPSQIDQIVV NLCVNARDAI TNNGTITIET GHHLAHKSSD PEQPACESVT
LSVSDDGCGI EKNNLDHIFE PFFTTKEPGK GTGLGLSTVY GIVKQNNGTI SCLSELKKGT
TFTIHLPLYN APPPAAETTP TSTLMYTGHQ TILLVEDELP ILKLCQLMLE HNGYKVLAAA
TAAEAIKRAE NFSGTIDLLV TDVIMPEMNG SELSKKLLSV RPELKILFMS GYTADIIAQD
NVLERGVNFL QKPVTMKSLT LALYHIFNPT PLQEP