| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1535 |
|---|
| Symbol | |
|---|
| ID | 6463427 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | + |
|---|
| Start bp | 1618507 |
|---|
| End bp | 1619349 |
|---|
| Gene Length | 843 bp |
|---|
| Protein Length | 280 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 642727761 |
|---|
| Product | Sec-independent protein translocase, TatC subunit |
|---|
| Protein accession | YP_002018401 |
|---|
| Protein GI | 194336607 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0805] Sec-independent protein secretion pathway component TatC |
|---|
| TIGRFAM ID | [TIGR00945] Twin arginine targeting (Tat) protein translocase TatC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGAAG AGATAGAATC CACAACCTCA CGGCAACTGC CGGAAAGTGA CCCAAAGAGC
ACAGCAATCA GCAAAGTCAG CGAGACCAGT GAGGCCAGCG AAGCCGAACC AGAAAACGAA
ATGAATTTTA TTGGCCATCT CGAAGAGATC CGGTCACGAC TGATCCAAAC CGGTATCGCG
CTGCTCATCG TCACCGCCCT GTGTGCCACC TATGCCGACT TTCTGGTCAA CGAAATTCTT
ATCGGACCAC TCAAAAGAAG CAGTGAAGGG TTGGTACTTC AGAACCTTGT CCCCTATGGA
CAGGTCTCCC TCTACTTTCA GGTCGTCTTT TTTGCAGGAT TCATTCTCTC ATTCCCCTTC
ATCGCCTGGC AAATCTGGCA GTTTGTTGCT CCCGGCCTGC ATGAACACGA ACGTAAAGCC
AGTCGTTTTT CAATACTCTT TATCTCCCTC TGCTTCTTTT CCGGCATTGC CTTTGGTTAT
TTCGTCTTTC TGCCCATCTC GCTGCAATTT TTTGCAGGAT TTGGAACAAG CCTGATCAAA
AACAATATCT CGGTACAAGA CTATGTCAGT TTCTTCATCG GAACACTTCT GACAGCAGGA
CTGGTTTTCG AACTTCCGTT CATCTCCTAT ATCCTTTCCA AAATCGGTCT ATTGACACCT
GCATTCATGC GGTTTTATCG CAAACATGCC ATCGTGTTTC TGTTGATTGT TGCTGCACTC
GTTACCCCCT CAACCGATCT GGTCACCCAG CTTATCATCG GCCTCCCGAT GATCCTTCTC
TATGAGCTCA GCATCCTGAT TTCAGCACGG GTCAACCGGA ACAATGCCGC ATTGAAATCA
TGA
|
|---|
| Protein sequence | MPEEIESTTS RQLPESDPKS TAISKVSETS EASEAEPENE MNFIGHLEEI RSRLIQTGIA
LLIVTALCAT YADFLVNEIL IGPLKRSSEG LVLQNLVPYG QVSLYFQVVF FAGFILSFPF
IAWQIWQFVA PGLHEHERKA SRFSILFISL CFFSGIAFGY FVFLPISLQF FAGFGTSLIK
NNISVQDYVS FFIGTLLTAG LVFELPFISY ILSKIGLLTP AFMRFYRKHA IVFLLIVAAL
VTPSTDLVTQ LIIGLPMILL YELSILISAR VNRNNAALKS
|
|---|
| |