| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1471 |
|---|
| Symbol | |
|---|
| ID | 6463532 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | - |
|---|
| Start bp | 1551720 |
|---|
| End bp | 1555571 |
|---|
| Gene Length | 3852 bp |
|---|
| Protein Length | 1283 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 642727699 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_002018340 |
|---|
| Protein GI | 194336546 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3063] Tfp pilus assembly protein PilF |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.791072 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATATTCA TCAGTTATCG TAAAGCAGAT TCCGAAGACC TAGCATTATC GCTTGCAGGA
AAATTAACTG AATGTTTCGG GGAAGATCAT GTTTTTCTTG ACCGAAATAC GATCGAACCC
GGAGATCATT GGCGAGAAAA AATTGAAACC GCCCTCTCAA AGACGTTGGT TGTTTTAGCT
TTGATTGGTC CAGAATGGCT ATCGGCTCAT GATGAGAACT TTGTGCGGCG TATTGATCGT
GATGACGATG TACTTGCATA TGAACTCGCT TTTGCACTTG CGAAAGGTAT CAAAATCATT
CCTCTCTATC TACATGACCT TAAACCATTG TTGGAGAAAG CATTTCCCGA CAGACTAAAA
GGGTTGACTC ATACACACAG TATGGAATTT GATCTCACGA GGGATCTGGA ACGACTTTTT
ATGGCGATTG TGAATAGAAC CGGTCTGGTT TTCACGAATT CCAATAAGCA AATACCTAGT
GGAGGCTCAT CGACAGTTCA AAAACACAAA CCATGTAACA TACCGGACTC AATCAGCACA
ATTTTCAAAG GTCGAACAGA TGAGGTTCTA AAGCTTCGAA ATAGATTTGA AGATAATCAG
GACATGAACA ATAATGTTTC TTGTCGTCAG GTCATTTCCG GACTTGGGGG TATTGGAAAG
ACCCGATTGG CAATTGAATA TGCATGGAAA TATCAAGAAC GTTATAACGC TGAACTGTTT
GTTGTGGCAG CTACCCCGGC TCAATTGCGC CGCAGTGTTG CTGATCTGGC TGCGCCGGGC
ATTCTTAACC TTCAGGAGTG GGAATGCAAT CTGGATGATA TCCGGATGGT TGCTGTGATC
AGTTGGCTTT CTGAGCATCC GGGATGGCTT TTGATCATCG ACAATGCCGA TAAGCAATCC
AGTGTGAAGA GTGTGAAAAA GTTATTGCCA GCACTTCGTC AAGGGCATGT GATCATCACA
TCACGAAATC ATGACTGGAG GTACTCTGCA ACACAGCAAG AGATCGATGT TCTGTCTATA
GAGGAATCAA AAAAGTTTCT GCTCGAGAGG ACAAACGACT TAAGACTCAA AACGCCTCAT
GATGAAGCTG TTGCTGAAGA ATTGGCCAGG GAACTTGGTG GTCTGGCTCT GGTACTTGAA
CAAGCTGGGG CATACATTCA AAATCGGGAT GGAGGGCTTT CACTTGCAGA TTATCTAGCC
CGATGGAGAG AAGGAGGAAA TACCTGCACA TGGTGTAACA GGAATGTGAA GCTTTACGAT
CGAAGTGTAT CAATCACGTG GGAAACGACA GCACGAGCAT TAAGCCCGGC AGCATTGACT
CTGTTTCGTA TTCTGTCATG GTTTGCACCT GATCCAATTC CTCGCAGAAT GGTCTCGGAT
CGCAATGTCA TTGAGATCAT CAGTGCTGCT GTTGAAAAGT CCGGACTGGA AAAAAGTGAT
ATTGATCCGG AACTTGCTCT TGGTGAGTTG ATTGCCTATT CAATGACCAA AAAAGTCGAT
GAACAGGGAA CCCCTTGCGT TGGTTTGCAT CGGGTAGTAC TGCAAATTAC CCGGGATCAA
ATGCCTTTGG AAGTAAAAGC TCCATCAGTA GTAGCTGCGG CTAAAATGCT TGAACTATTT
GCTCCGAAAG AATCATACAG GCCGGAGAAT TGGATGAAAT GGCGGTTGCT TATTTCTCAT
GCTGAAGCAA TTTATAGCAT CTTGAGCAAA TTAGAAGAGG AGTATTGGAA TATTGAGCTG
ATGAAAATGC TTGCACTGTA CTATATGGGG CAAGAACGAA ATAAGGATGG AGTTCCAATC
CAGCGCAAAG TTTTAAGATG GGTACAGAAA TATCTCGACC CTGATGATCC GGAGATCTTC
CTCGCCATGA ATGATCTTGC GCTGATGCTT GATTTTTCTG CTGAAGAAGA AAAAGAAACT
CTTTACAAAG AGGCATTGGA TGGACGCTGT CTGGTGCTTG GTGAAGAAAG TGAGGCGGCG
GGTGAGACAC GTCATAACTA TGGTTGTTTT TTGAGCAGTT ATGGTCGCCT GGCTGAAGCT
GAACCGTTGA TGCTTCGGGC ATTGAGTACC CATGCGAAAG TCAACGGTCC ATTCCATTGG
CGGACACTGA TGGCAGAGAC GAGTCTTGCG GATATCTTTT TGGATAAGGG AGAAGTGGCC
AAAGCCGAGG ATTTGATTTG TTCTTCACTT GTAAACAAAA AAAAGCATTT GGGTGAAGAA
CACCCTGATA CCTTAAAAAA CATGGAATCG CTTGCGTGGG TGCTGGTAAG ACGTGCTGAT
TTCGATGAAG CCGAAAAACT GCTGCTGCAG GTATTTGAAA CCAGAAAAAG GGTGCTTGGC
TCTGGTGAGC CTTCTACGAT TGATACAATG AATGATCTGG CATCATTTTA TTGCCGGATT
GATAACTGTG CTCAAGCGGA GAAATTGTTA AAGCAAGCTT TGGATTTGAA CGAAAATAAT
CAAGGGTCAC AGCATTATCG TACTCTTCGC TCGATTTATA TGCTGGCAAA TTTTTATGCA
TTCCTTGGTA ATGCAGCTGT TGCTAAACCT TTGTATTGGA AGGCCATTGA TGGCATGCGT
CTTGACCGGG GATCCGACCG TCCTGAAACA TTGCAAATTA TGTCCGATCT TGCAAATTTA
CTTCAGCACT CAGGAGAGCG TATGCAGGCC GAGAAGATTT ACAGGGAAGT CATGGAGACA
AACAAGCGTG TTCGAGGAGA TGAGCATCAA ATGACTCTTA ACAGTATAAA TCGATTGGCA
ATATTTTATG ATGAAACAGG TGATGAAGCA AGCGCTGAAA AAATGTACAG GGATGCTTTG
GATGGACTTA CAAAAAAACG AGGTACGGAT CATCGGGATA CGCTGGTTGT TCTTGGTAAC
TATGCAGAGC TTTTGCGTGA AAAAGGCGAT TATGAGGAGG CCGAAAAATT ATTCAAAAGC
ATAGTTGAAA CAAATGTGCG CCTCTATGGT AAGGAGCATC TTATGACCTA TAACAGCATG
AACCAGTTAG CGATATTTTT CACTCGTATC GAAAACTATG AAATGGCTGA ACAGTATTTT
AACCTTGCAT TGGAAGGCAA GCAAAGAATT CAGGGGCCAA AACACCCCGA CACACTCATC
CTGATGAGCA ATCTTGCGGA TCTGCTTGCA AAAAAAGGTG AATATGAGCA TGCCGAGGCT
TTATTTGACA AAGTCATCGA AATTAATGAA TGTGAGTTGG GGAAAGAACA CCCGAACACG
CTGGCCAGTC TTTTAAAGCT GGCGGAGTTA CTGGAAAAGT CGAATAAAAT CGAAGAATCT
TTAAAAATCA GGGATCGATA CATTGAGGTA AAGGTGCGAA AAAGTGATAC CGCAAGCCTT
GTCTCACTTA GGGAGCTTGC TTTGCAGTTT TACCTTAAAG GCGAATATAA ACGTGCTGAG
GAACTGTTGT TAATTGTTCT GGATCAAAAC TTTCAAATAC CAGGTATATG TTGCCAGTTG
GTACGTCTTT TTATCGTGAC AGACAGAGAT GATAATGCGC GCAAAATGTT GTCGAAGGCT
TTGGAAAACA AAGAAAAGGC AGAGCCTTAT GTTATTCCAA GAATTCTCTT TTTACAAATC
CTGTTTGATT TTCTTGATGG AAATATACTT GAAGAGCACA TGGGTATTTT GAAATCTGTT
CTAAAAACAG AACGTGAATT TCATGAATGG AAACTCAAGC CGGTGCTTAA TCATCTCGAA
AAACGATTGT CGGAGAGTGC TTTTGTTTTT CTAAATGCTC TTTCAGATGC ACTTTGTGAT
AAAAAGAAAC TGAAAGGTCT TGATCGTTTT TCTGAATGGT GTTCTGTAGA GCCAGTGGCA
TCTCAAGGAT AA
|
|---|
| Protein sequence | MIFISYRKAD SEDLALSLAG KLTECFGEDH VFLDRNTIEP GDHWREKIET ALSKTLVVLA
LIGPEWLSAH DENFVRRIDR DDDVLAYELA FALAKGIKII PLYLHDLKPL LEKAFPDRLK
GLTHTHSMEF DLTRDLERLF MAIVNRTGLV FTNSNKQIPS GGSSTVQKHK PCNIPDSIST
IFKGRTDEVL KLRNRFEDNQ DMNNNVSCRQ VISGLGGIGK TRLAIEYAWK YQERYNAELF
VVAATPAQLR RSVADLAAPG ILNLQEWECN LDDIRMVAVI SWLSEHPGWL LIIDNADKQS
SVKSVKKLLP ALRQGHVIIT SRNHDWRYSA TQQEIDVLSI EESKKFLLER TNDLRLKTPH
DEAVAEELAR ELGGLALVLE QAGAYIQNRD GGLSLADYLA RWREGGNTCT WCNRNVKLYD
RSVSITWETT ARALSPAALT LFRILSWFAP DPIPRRMVSD RNVIEIISAA VEKSGLEKSD
IDPELALGEL IAYSMTKKVD EQGTPCVGLH RVVLQITRDQ MPLEVKAPSV VAAAKMLELF
APKESYRPEN WMKWRLLISH AEAIYSILSK LEEEYWNIEL MKMLALYYMG QERNKDGVPI
QRKVLRWVQK YLDPDDPEIF LAMNDLALML DFSAEEEKET LYKEALDGRC LVLGEESEAA
GETRHNYGCF LSSYGRLAEA EPLMLRALST HAKVNGPFHW RTLMAETSLA DIFLDKGEVA
KAEDLICSSL VNKKKHLGEE HPDTLKNMES LAWVLVRRAD FDEAEKLLLQ VFETRKRVLG
SGEPSTIDTM NDLASFYCRI DNCAQAEKLL KQALDLNENN QGSQHYRTLR SIYMLANFYA
FLGNAAVAKP LYWKAIDGMR LDRGSDRPET LQIMSDLANL LQHSGERMQA EKIYREVMET
NKRVRGDEHQ MTLNSINRLA IFYDETGDEA SAEKMYRDAL DGLTKKRGTD HRDTLVVLGN
YAELLREKGD YEEAEKLFKS IVETNVRLYG KEHLMTYNSM NQLAIFFTRI ENYEMAEQYF
NLALEGKQRI QGPKHPDTLI LMSNLADLLA KKGEYEHAEA LFDKVIEINE CELGKEHPNT
LASLLKLAEL LEKSNKIEES LKIRDRYIEV KVRKSDTASL VSLRELALQF YLKGEYKRAE
ELLLIVLDQN FQIPGICCQL VRLFIVTDRD DNARKMLSKA LENKEKAEPY VIPRILFLQI
LFDFLDGNIL EEHMGILKSV LKTEREFHEW KLKPVLNHLE KRLSESAFVF LNALSDALCD
KKKLKGLDRF SEWCSVEPVA SQG
|
|---|
| |