| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1433 |
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| Symbol | |
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| ID | 6463580 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | - |
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| Start bp | 1504575 |
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| End bp | 1508174 |
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| Gene Length | 3600 bp |
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| Protein Length | 1199 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 642727666 |
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| Product | exodeoxyribonuclease V, beta subunit |
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| Protein accession | YP_002018307 |
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| Protein GI | 194336513 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | [TIGR00609] exodeoxyribonuclease V, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACCAC TGAACCATGC AGCCGTAGAA CTCTCCGGCA TCAACCTGAT CGAGGCCAGT
GCCGGGACGG GGAAGACCTA TGCTATTGCC TCGCTCTACC TTCGCCTGCT TCTGGAAAAA
GAGCTTCTGC CGGAACAGAT TCTTGTGGTA ACGTATACCG AAGCGGCTAC GCAGGAGCTT
CGCGGCAGAA TCCGCAGTCG TATCCGTGAG GCGCTCGAGG TGATGGAGGG TTGCGATACC
AGCGACATAT TCCTTGGTGA GCTATATGAA ACGGCCTCTC TGAGTGGGAT GAAAAAGGTG
CGCGACCTCC TTGAACGGGC GCTCGGCGCT TTTGATACCG CTTCGATTTT CACCATTCAC
GGCTTCTGCC TTCGGGTGCT GCAGGATAAC GCCTTCGAGA GCGGCTCACT CTATGATACT
GAATTGGTGA CTGATCAGAC AGAGCTGCTT CGTGGTATTG TGGATGATTT CTGGAGAGTA
CATTTTTTCG GTGAGTCTGC GCCACTGCTC GGCTATGCCC TGCGTAACCG CCTCACTCCT
GAAACCTTCC TGTCGCTGTT GAAGAACCTT CATGCCGGAA CCGGGGTTGA GGTTATCCCT
GATTTCAGTG ATGAGCAGAT AACGGCGATT GAGAGGGAGT GCTCGGCTGC TTACAGTGAT
GCCAGTTCAA TTTGGATGGG GCATAAAGGC TCGATAACTG AACTTCTGAC CACTGAGAAG
GGTTTGAGCC GTTCAGCCAA ATATTACCGC GCTGACCTGC TTGAACCGCT TTTTTCCGGG
ATGGATGCTT TTGTTGAAGG AGGCAATGCG TATGACCTGT TTGAGTCATT CCCGAAATTG
ACCCTTGAGG GTATTCTTGA AGGCACCAAA AGCAAAGGTG TGGCGCCCTC CCATCCCTTT
TTCCTTTCCT GCCAACGGCT CCAGGATGCA GTGGAGAGGC GTCTTCTTGC CCTCAAGGCT
GAACTGCTTC GCTTTTATCA GAAGAACCTG CCATTGCGCA AACGAATCGG AAATATCCGT
TTTTTTGATG ATCTCCTTGA GGATCTCTAC CATGCGCTTT TGCCAGAGCA GGGCGGGGAT
GCACTTGCCG AGATTATCAG AAAAAAGTAT TGCGCAGCAC TTATTGATGA GTTTCAGGAT
ACCGACCGCC AGCAGTATGA GATCTTCAGG AGCATCTATG CGACATCCGG GTTGCCGCTT
TTTCTAATCG GCGATCCAAA ACAGGCCATT TACAGTTTCC GTGGTGCGGA TATCTTCGCC
TACATAAGAG CAGCGCGTGA GGTAGGTGAG GAGCGGCGCT TTACCCTGAC GGAGAACTGG
CGCTCTTCTC CGCTGCTGCT TCAGGCGTTC AATACCTTGT TCAACAATAC GATGAGGCCG
TTTCTCCATG ATGAAATTCT CTATCACCCG CTCGCTTCAG GGAAAAGCGA GCCGGAGAGG
GCGGATGGAG CGGGGGAAGA TCTTGAGCCG ATGCAGCTCT GGCTGATGGA TTCGAGTGAT
GAGAAGAGCG GCATGTTGAC TGTGGATGAT GCTGGCGCCT GGGCTTCAAC GGCCGTTGCC
GGTGAGATTG TCCGAATCCT GCAGGATGGT CAAACCCTTT TCAGCGGCAG GCCATGCAGT
GCCGGAGATA TTGCCGTTAT TGTGCGCACG CACCGGCAGG CGGCTCTTAT GCTCAACGCC
TTGCATAACC GGGGCGTTGC CGGGGTCATG CGGAGCAATC AGAGTATCTT TTTGTCGAGA
GAGGCTGAAG AGGTGCGCAT CCTGCTCTCA GCCCTCGCTG ATCCGGGCAA CGAGCCAAAG
GTACGTGCGG CGCTGGTGAC CGATCTGCTT GGCAGGTCGG GCAACGATAT TGAGAGGTTT
CATGATGATG AAGCGTCATG GATAGCCTGT CTCAGGCAGT TCCGACTCTA TCACGAGCTC
TGGCATGAGC GGGGATGTAT GGTGATGAGC CGGGAACTGA TGGCAAAGGA GGAGGTGCGT
GGACGTCTGC TCAGTTACCC TGACTCTTCG GGTGAGCGAA GGCTGACCAA TCTGCTGCAC
TGTTTTGAAT TGCTGCACCG TGAGGAGCAT GAGCGGGGAA CCGGTATGGA GGGACTTGTA
GCTTGGTTCA GTGAACGGAC AGGGGCTGCG GATGAGACGG ACGAGTATCA AATCCGTCTT
GAAACCGATG ATGCTGCCGT AAAAATCGTT ACCATTCACG TCAGCAAGGG ACTGGAATAT
CCGGTTGTTT TCTGCCCCTT TCTCTGGGGA GGCGGAAACC GCAAAGGGGA GGTGCTGATG
TTCCATGATG ATGCGGGGCA TCTGGTGAAG GATTTCGGCT CTTCCGGCTA TGAGAGTAAC
CGGCGGCTTG CCGACAAGGA GTCGCTTGCC GAAAGCCTCA GACTGCTCTA TGTGGCACTG
ACGAGGGCCA AGTATCGCTG CTATCTTTTC AGCGGTAAAA CCCGTTCGGA GAACTCGCCG
ATCAACTATC TGCTCCATGC ATCGAGTGCA ACAAGAGTTT CGGAAAATCA GGCTTCGGCG
CTTGCTGTTG AATCAAAAAC CCTGACCACC GGGATGATGG CCGAGCAGTT GGAGTCGCTC
GCCGAAAGTT CAGAAGAGTC AATCGGCTTC ACGTTGTTGA CGCGCGAAGC GGTTGACGGG
ATGGCCAGAC TCTCCCGGAC GGATAGGGAG TCACAGCATG ATGCCCTTGT ACTGCGCCAC
TTCAGCGGAA CCATTGACAC CACCTGGCGG GTTTCAAGCT TCACCTCGTT CAGCCGCCAT
GAACCGATAA GCACCGAGCT ACCTGATCGC GATGAACCAC AGGCTGATGG GGGAGTCCCC
TCCGCAATCG TTGCTCCCGC CGGTCATGAA AAAAGCATCT TTACCTTTCC AAGGGGGGCT
CAGGCCGGAA TTTTTATGCA CGGGATTTTT GAGAAGCTTG ATTTTGCCTC TCCCTCCGAA
ACGGCTATCC ATGAGCTTGT TGCAAAAGGG CTTGAACGCT ATAACTATAA AGAGGAGTGG
CAGCCGCATA TCACAGCCAT GATTCATAAC GTTCTTGAGA CGCCTCTTGC TTCGCGCGAC
AGCCTGTTTA CTCTTGGCGC TCTCTGCCAG AAAAGCTGGA TCACTGAGCT GGAATTTTTC
TTTCCGCTCC GGTTTATCAA TTCATCTCAT CTTGCTGGCC TTCTGCTCCG TCATGGCCTT
CTGCGGAGTG GAGTTGACCT TGCCTCGCTT GCACCCATGC TGCAGTTCAG CCCGGTCAGG
GGGATGCTTA TGGGCTTCAT GGATATGGTT TTTGAGCAGA ATGGCCGCTA CTATCTGCTT
GACTGGAAAT CCAATCATCT TGGTAACAGC GAAGAGGATT ACGCTCAGGA TGCCATGAGT
GTGGCTATGC AAAAACACCT CTACCCGCTG CAATACCTGT TGTATACCGT GGCTCTCAAC
CGCTACCTGT CGTTAAGGGT CAAAAACTAC CGTTACAGCA CCCATTTCGG GGGAGTAATT
TATGTCTTTC TTCGGGGAGT GAACAGGGAG CACGGGGAAA ACTTCGGCTT TTTCCGCGAC
CTTCCCCCTG AAGAGTTGAT TGAAGCGCTG ACAAATCTGC TGATAGATGA GGATAAATAA
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| Protein sequence | MKPLNHAAVE LSGINLIEAS AGTGKTYAIA SLYLRLLLEK ELLPEQILVV TYTEAATQEL
RGRIRSRIRE ALEVMEGCDT SDIFLGELYE TASLSGMKKV RDLLERALGA FDTASIFTIH
GFCLRVLQDN AFESGSLYDT ELVTDQTELL RGIVDDFWRV HFFGESAPLL GYALRNRLTP
ETFLSLLKNL HAGTGVEVIP DFSDEQITAI ERECSAAYSD ASSIWMGHKG SITELLTTEK
GLSRSAKYYR ADLLEPLFSG MDAFVEGGNA YDLFESFPKL TLEGILEGTK SKGVAPSHPF
FLSCQRLQDA VERRLLALKA ELLRFYQKNL PLRKRIGNIR FFDDLLEDLY HALLPEQGGD
ALAEIIRKKY CAALIDEFQD TDRQQYEIFR SIYATSGLPL FLIGDPKQAI YSFRGADIFA
YIRAAREVGE ERRFTLTENW RSSPLLLQAF NTLFNNTMRP FLHDEILYHP LASGKSEPER
ADGAGEDLEP MQLWLMDSSD EKSGMLTVDD AGAWASTAVA GEIVRILQDG QTLFSGRPCS
AGDIAVIVRT HRQAALMLNA LHNRGVAGVM RSNQSIFLSR EAEEVRILLS ALADPGNEPK
VRAALVTDLL GRSGNDIERF HDDEASWIAC LRQFRLYHEL WHERGCMVMS RELMAKEEVR
GRLLSYPDSS GERRLTNLLH CFELLHREEH ERGTGMEGLV AWFSERTGAA DETDEYQIRL
ETDDAAVKIV TIHVSKGLEY PVVFCPFLWG GGNRKGEVLM FHDDAGHLVK DFGSSGYESN
RRLADKESLA ESLRLLYVAL TRAKYRCYLF SGKTRSENSP INYLLHASSA TRVSENQASA
LAVESKTLTT GMMAEQLESL AESSEESIGF TLLTREAVDG MARLSRTDRE SQHDALVLRH
FSGTIDTTWR VSSFTSFSRH EPISTELPDR DEPQADGGVP SAIVAPAGHE KSIFTFPRGA
QAGIFMHGIF EKLDFASPSE TAIHELVAKG LERYNYKEEW QPHITAMIHN VLETPLASRD
SLFTLGALCQ KSWITELEFF FPLRFINSSH LAGLLLRHGL LRSGVDLASL APMLQFSPVR
GMLMGFMDMV FEQNGRYYLL DWKSNHLGNS EEDYAQDAMS VAMQKHLYPL QYLLYTVALN
RYLSLRVKNY RYSTHFGGVI YVFLRGVNRE HGENFGFFRD LPPEELIEAL TNLLIDEDK
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