Gene Ppha_1428 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPpha_1428 
Symbol 
ID6462471 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePelodictyon phaeoclathratiforme BU-1 
KingdomBacteria 
Replicon accessionNC_011060 
Strand
Start bp1498696 
End bp1500558 
Gene Length1863 bp 
Protein Length620 aa 
Translation table11 
GC content47% 
IMG OID642727662 
Productputative transcriptional regulator 
Protein accessionYP_002018303 
Protein GI194336509 
COG category[K] Transcription 
COG ID[COG2865] Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00334875 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTGATT TTCTGAACAC TATTATCACA AAACCTGAAG GAAAAACGTT GGAATTCAGG 
CGGGATTGCG CATCACCGAC GCTTCTGATG AAAACGCTTG TGGCCTTTGC CAACACAGCA
GGAGGGCGTT TAGTTATCGG TGTGGGAGAG GACAGGCAAA TTGTTGGCAT GAAAGCTCCA
CTTGATGAAG AAGAGAGGCT TCGCAGTCTG ATAACCGACG GTATTGCACC TCATCTGATA
CCCAATATAG AGCTCATCAC CATACACGAC ACAACGCTTT TGGTTGTTGA AGTGTTTGTA
AGCGCATTAC GTCCACACTG GCTCAAAGCA GAAGGTCATG AACAGGGCGT TTATGTCCGG
ATTGGCAGAT CCAATTATCA GGCTGATACC GCTTTGGTCG CTGAACTTGG CCGGTCGGCA
GAAGGAATCT CATTTGACGA AATGCCCATA CCAGAACTGA GTAAAGATGA TCTTGATTTA
GTTGCGATAC AAAAATTTTT TGCCGGTGAC TGGAAATTAG ATGAGCAGGC ATTGGTTACG
ATCAAACTGC TCACATCGTA CCAACGACGA CTTGTACCCA CCAAAGGAGC CATTCTGCTC
TTCGGTAAAG AGCGCATACT CCATTTTTCC GATGCATGGG TGCAATGTGG ACGATTCACA
GGAACCGACA AAGCTGTTAT TTTTGACCAT ACAGATATAT ACGATCACCT GCCCGGAGCG
GTTGAGAGCA TCATGCAGTT TTTATATCGG CATATAAAAA AAGAGAGACC AATACCACTC
ACCATTTTGC GTGAAGCTGT CATTAATGCA CTGATGCACG CCGACTACTC CCAACGTGGC
GCACCAATCA GGATCGCCTT TTTTGATGAC CGTATCGAAA TTGAAAATCC CGGAACACTT
CTCCCAGGTA TGACCCTTGA TACCATGAGG CAAGGCTCAT CGAGAATCCG CAATCATGTT
ATTGCCCGAA TTTTCCGCGA GCTGAATCTT ACTGAACGCT GGGGCAGCGG CATAAGAGCC
ATTTTCAACG AAGCGACAGA TTATGGATTG CCTGAACCAC AGATTATGGA GATCGGTATG
CGAGTACGAA TGGTTATCTA CTTCGCATCA CCAGGTCAGA GCACAACAAC CAAAGCACAA
GACGAGCAGA GTCACACATT ACCAAAAGCA CAAGCACAAC TTCTTGTGGA GGCACAAGGT
GAACTCACAA GAAAAGCACA AGATGAGTGG GGGGGTGACA GGGTAATAAG GGCACAAGTC
AGAGGGCATG TCGATCATGA TATTATTGCG CTGTGTTCGG AAGCGCCATT GTCATCAGCA
GAGATTGCTG CGGCTCTTGG GCACAAGCAG TTGAGCGGAA ATCTGCGCAA AGCTCTGCCT
CGATTAAGGG AAGCAGGGCT ACTGGAGTAT ACTATTCCTG GAAGCCATAA CAGTCGTATG
CAAAAATACC GGCTAACAGC AAAAGGGGAA GCCGTTCATG CAGCAAGCTC CATTCCTGAC
AATTCAACAA AAGTACAAGT AGAAGAACAA GTTGACATTA GTGAAAAAAC GCAAGGGCAC
AACTTGATTC GGGCACAAGG TATGCTTTTT TGTGAAGCAC AAGATAACTC TCCAATTGAG
GCACAAGTGC GTATCCGAAT TCTTGCTGCC TGTTCAGTAC AGACTCTTTC CTCGGCAGAG
ATCGCTGCGG CTCTGGGGCA CAAGCAGTTG AGCGGGAATC TGCGTAAAGC TCTGCCTGAT
ATGAGAGAGG CCGGACTGAT TCAGTACACC ATTCCGGAAA AACCAAACAG TCGATTACAA
AAATACCGTT TAACCGACAA AGGCAGGGCG TTACTTCGTG CAGCACAGGA GCAAAAATCA
TGA
 
Protein sequence
MSDFLNTIIT KPEGKTLEFR RDCASPTLLM KTLVAFANTA GGRLVIGVGE DRQIVGMKAP 
LDEEERLRSL ITDGIAPHLI PNIELITIHD TTLLVVEVFV SALRPHWLKA EGHEQGVYVR
IGRSNYQADT ALVAELGRSA EGISFDEMPI PELSKDDLDL VAIQKFFAGD WKLDEQALVT
IKLLTSYQRR LVPTKGAILL FGKERILHFS DAWVQCGRFT GTDKAVIFDH TDIYDHLPGA
VESIMQFLYR HIKKERPIPL TILREAVINA LMHADYSQRG APIRIAFFDD RIEIENPGTL
LPGMTLDTMR QGSSRIRNHV IARIFRELNL TERWGSGIRA IFNEATDYGL PEPQIMEIGM
RVRMVIYFAS PGQSTTTKAQ DEQSHTLPKA QAQLLVEAQG ELTRKAQDEW GGDRVIRAQV
RGHVDHDIIA LCSEAPLSSA EIAAALGHKQ LSGNLRKALP RLREAGLLEY TIPGSHNSRM
QKYRLTAKGE AVHAASSIPD NSTKVQVEEQ VDISEKTQGH NLIRAQGMLF CEAQDNSPIE
AQVRIRILAA CSVQTLSSAE IAAALGHKQL SGNLRKALPD MREAGLIQYT IPEKPNSRLQ
KYRLTDKGRA LLRAAQEQKS