Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ppha_1428 |
Symbol | |
ID | 6462471 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelodictyon phaeoclathratiforme BU-1 |
Kingdom | Bacteria |
Replicon accession | NC_011060 |
Strand | - |
Start bp | 1498696 |
End bp | 1500558 |
Gene Length | 1863 bp |
Protein Length | 620 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 642727662 |
Product | putative transcriptional regulator |
Protein accession | YP_002018303 |
Protein GI | 194336509 |
COG category | [K] Transcription |
COG ID | [COG2865] Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00334875 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTGATT TTCTGAACAC TATTATCACA AAACCTGAAG GAAAAACGTT GGAATTCAGG CGGGATTGCG CATCACCGAC GCTTCTGATG AAAACGCTTG TGGCCTTTGC CAACACAGCA GGAGGGCGTT TAGTTATCGG TGTGGGAGAG GACAGGCAAA TTGTTGGCAT GAAAGCTCCA CTTGATGAAG AAGAGAGGCT TCGCAGTCTG ATAACCGACG GTATTGCACC TCATCTGATA CCCAATATAG AGCTCATCAC CATACACGAC ACAACGCTTT TGGTTGTTGA AGTGTTTGTA AGCGCATTAC GTCCACACTG GCTCAAAGCA GAAGGTCATG AACAGGGCGT TTATGTCCGG ATTGGCAGAT CCAATTATCA GGCTGATACC GCTTTGGTCG CTGAACTTGG CCGGTCGGCA GAAGGAATCT CATTTGACGA AATGCCCATA CCAGAACTGA GTAAAGATGA TCTTGATTTA GTTGCGATAC AAAAATTTTT TGCCGGTGAC TGGAAATTAG ATGAGCAGGC ATTGGTTACG ATCAAACTGC TCACATCGTA CCAACGACGA CTTGTACCCA CCAAAGGAGC CATTCTGCTC TTCGGTAAAG AGCGCATACT CCATTTTTCC GATGCATGGG TGCAATGTGG ACGATTCACA GGAACCGACA AAGCTGTTAT TTTTGACCAT ACAGATATAT ACGATCACCT GCCCGGAGCG GTTGAGAGCA TCATGCAGTT TTTATATCGG CATATAAAAA AAGAGAGACC AATACCACTC ACCATTTTGC GTGAAGCTGT CATTAATGCA CTGATGCACG CCGACTACTC CCAACGTGGC GCACCAATCA GGATCGCCTT TTTTGATGAC CGTATCGAAA TTGAAAATCC CGGAACACTT CTCCCAGGTA TGACCCTTGA TACCATGAGG CAAGGCTCAT CGAGAATCCG CAATCATGTT ATTGCCCGAA TTTTCCGCGA GCTGAATCTT ACTGAACGCT GGGGCAGCGG CATAAGAGCC ATTTTCAACG AAGCGACAGA TTATGGATTG CCTGAACCAC AGATTATGGA GATCGGTATG CGAGTACGAA TGGTTATCTA CTTCGCATCA CCAGGTCAGA GCACAACAAC CAAAGCACAA GACGAGCAGA GTCACACATT ACCAAAAGCA CAAGCACAAC TTCTTGTGGA GGCACAAGGT GAACTCACAA GAAAAGCACA AGATGAGTGG GGGGGTGACA GGGTAATAAG GGCACAAGTC AGAGGGCATG TCGATCATGA TATTATTGCG CTGTGTTCGG AAGCGCCATT GTCATCAGCA GAGATTGCTG CGGCTCTTGG GCACAAGCAG TTGAGCGGAA ATCTGCGCAA AGCTCTGCCT CGATTAAGGG AAGCAGGGCT ACTGGAGTAT ACTATTCCTG GAAGCCATAA CAGTCGTATG CAAAAATACC GGCTAACAGC AAAAGGGGAA GCCGTTCATG CAGCAAGCTC CATTCCTGAC AATTCAACAA AAGTACAAGT AGAAGAACAA GTTGACATTA GTGAAAAAAC GCAAGGGCAC AACTTGATTC GGGCACAAGG TATGCTTTTT TGTGAAGCAC AAGATAACTC TCCAATTGAG GCACAAGTGC GTATCCGAAT TCTTGCTGCC TGTTCAGTAC AGACTCTTTC CTCGGCAGAG ATCGCTGCGG CTCTGGGGCA CAAGCAGTTG AGCGGGAATC TGCGTAAAGC TCTGCCTGAT ATGAGAGAGG CCGGACTGAT TCAGTACACC ATTCCGGAAA AACCAAACAG TCGATTACAA AAATACCGTT TAACCGACAA AGGCAGGGCG TTACTTCGTG CAGCACAGGA GCAAAAATCA TGA
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Protein sequence | MSDFLNTIIT KPEGKTLEFR RDCASPTLLM KTLVAFANTA GGRLVIGVGE DRQIVGMKAP LDEEERLRSL ITDGIAPHLI PNIELITIHD TTLLVVEVFV SALRPHWLKA EGHEQGVYVR IGRSNYQADT ALVAELGRSA EGISFDEMPI PELSKDDLDL VAIQKFFAGD WKLDEQALVT IKLLTSYQRR LVPTKGAILL FGKERILHFS DAWVQCGRFT GTDKAVIFDH TDIYDHLPGA VESIMQFLYR HIKKERPIPL TILREAVINA LMHADYSQRG APIRIAFFDD RIEIENPGTL LPGMTLDTMR QGSSRIRNHV IARIFRELNL TERWGSGIRA IFNEATDYGL PEPQIMEIGM RVRMVIYFAS PGQSTTTKAQ DEQSHTLPKA QAQLLVEAQG ELTRKAQDEW GGDRVIRAQV RGHVDHDIIA LCSEAPLSSA EIAAALGHKQ LSGNLRKALP RLREAGLLEY TIPGSHNSRM QKYRLTAKGE AVHAASSIPD NSTKVQVEEQ VDISEKTQGH NLIRAQGMLF CEAQDNSPIE AQVRIRILAA CSVQTLSSAE IAAALGHKQL SGNLRKALPD MREAGLIQYT IPEKPNSRLQ KYRLTDKGRA LLRAAQEQKS
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