| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1423 |
|---|
| Symbol | |
|---|
| ID | 6463587 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | - |
|---|
| Start bp | 1487782 |
|---|
| End bp | 1492953 |
|---|
| Gene Length | 5172 bp |
|---|
| Protein Length | 1723 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 642727658 |
|---|
| Product | DEAD/DEAH box helicase domain protein |
|---|
| Protein accession | YP_002018299 |
|---|
| Protein GI | 194336505 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1205] Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATGTCT TCAAGACTCA CGCAAGTATC ATAGAGGATT ATTCTTCCTA CATCCACAGT
TTCATCTCCA TTGCTGACCC GGACATCAGC CAGGTTGTTG ATCGTGCATT AAGTACGGGC
AAGCTATGGC CAGAGCCACT TTTGCAGTTT AACCCTTCGT TTGAGATGTT CGGTGGGCTC
GAAAAGCTTA TTGAATCGAA AACGTTGCAT GGGGCCATTG GCGACATTTT CAAAGGGTAC
AAACTCTATC GCCATCAGGT TGAGGCAATA CGATTGGGCA CCAGCGGCAA GGATTTTATC
GTTACATCCG GCACCGGCTC GGGCAAGTCG TTGACCTATA TCGGTTCTAT TTTTCACCAT
CTTCTTTCGA ACCCGGCAAC AAAAGGGGTT ACTGCGGTTG TCGTCTATCC CATGAATGCC
CTCATTAACT CGCAGTTCGA AGAGTTCACC CGATACAAAA AGAATTATGA GGATGCCACC
GGCAAAGAGT TTCCGATCAT CTTTGGCCAG TATACAGGTC AGGAGGGTGA GGAGGCAAGG
GAAAAAATGC GGAAGAACCC GCCGCATATT CTCTTGACCA ACTACATGAT GCTGGAGCTG
TTGTTAACCC GCGTACGTGA ACGCAACATT CGAGAGAGCA TCTACCTGAA TCTCCGGTTT
CTGGTCTTCG ATGAACTGCA CACCTATCGA GGTCGGCAGG GTGCGGATGT TTCCATGTTG
ATTCGACGGA TTCGATCCAA TTGTGTCCAA CAGATTGTGA GTATAGGTAC CTCTGCCACC
ATGGTTTCTG ATAGTGTTGG TGATATTGAG CATCAGAAAG CAGAGGTTGC CAACGTTGCC
ACCAAACTCT TTGGCTGCCA ATTCACCACA GAGCAGGTTA TCAACGAAAA GCTTGCCCGT
TCACTTTCTC CCAACGGCAC GATTCCTGCC AGCCATTTCC TTGCATCGGC CATTGAGTCA
GCCATTAATC AGGACTCCGA TATTGAGGCA CTCAAAAAGA ATCCGATTGC CATCTGGCTG
GAGAACAAAA TTGCACTTGA AGAGCGAGGA ACTGATCTTG TTCGGGGAAA ACCAAAGCGG
CTGAGAGAGA TAGCTTCAGA ATTGGCAAAC GATTCCGGAA TGGCTGAAGA GAGGTGCCGT
CTTTATCTGG TGGATCTACT CCTCTGGATC AGCGTCTCCA ATGTTCGGCA GCAAGAGTCG
GGAGAGCGCT ACACCTTTCT GCCCTACAAG CTCCATCAGT TTATTTCGCA AACGGGTTCT
GTCTATACAA CCCTTGATCA GGATGAGAAG CGCGATATCT CTCTTGAGCC CGGGGTCTAT
AAAGTTGATG AGACCGACAA AAAACCAATA TTTCCCAATG TCTTCAGTCG TGGAAGCGGC
CATCCCTTCA TCTGCGTCTC CCTTGCAGGT AACCGATTGG AGCCACGTGA ATTTCGTGAC
ATGACCGAAG ATGAGGAGAG CAATGACGGT TACTTGATTA TTGGCGAAGA GATCTGGAAT
CTCGATGAAG ATATTGAAAT GCTGCCCGAA TCCTGGTTTC GCAGAACAAA GTCGGGTGTT
ACGCTCGACA GCAAAAAAAG GGGATACTTT CCCGTTAAAC TCTGGTTTGA CGAATTCGGA
AACTGCTCCG ACAAAGAAGA AAAAAAATGG TGGGGCTGGT TCATGAAGGC TCCGTTACTT
TTTGATCCCA CATCGGGCGG TTTTTTTGAT ACCAGAACCA ATGAGGGCAC CAAACTGACC
AAGCTGGGCA GCGAAGGGCG CAGTACCTCC ACTACCATCA CCGCCTTCTC CATTCTCAAT
CGTCTCAGTG ACGCTGGCTA CGCGATAAAA GAGCAGAAGC TGCTCAGCTT TACCGATAAT
CGTCAGGATG CGGCCCTGCA GGCAGGACAT TTCAATGACT TTGTGCAGGT CATTCGCCTT
CGTGCAGGCA TTCATAAGGC ATTGCAGCAG GCACCAGTGG GCATGCTCAC CTTTGCCACC
CTTGGCGAGG CCGTTTTCAA GGCGCTTGGG CTACCGTTTC TTGAGTATGC CAACAGAAGC
GAGGAGTCGA TGTTGGCTCC AATCCGGCGA AAATATGAGC AGGCGCTTCA GGATTTCCTG
CTCTATCGTT CCATGGCTGA CCTCCGGCGG AGCTGGCGAG TAGTATTGCC CAACCTCGAA
CAATGCGCCC TGTTGACCAT AGAGTACGAG GATCTGGATG AAATTATCGC TACCGATGCA
TTCTGGGCCG TATCGCCGCT TTTTGGATCG TTGAATCATA CTGATCGTAA AGAGCTGGTG
ACCACCATAC TCGATTTTTT CCGGCTTGAA TATGCCATAC ACAGCGAAAA CTTTCTTACC
CAGTCACGCA TACAGGAATC CGAGCGGCAG TTCCGCGAGT CGTTAAAACA GCCCTGGACT
CTCGATCGTA ATGAGAAGCT TCAGGAACCC TACTACATCC GCTATCAAAA GCTCAGCAAA
ACCGCCAAAC TCTACACCAA AAGCATGGGG CCCGCCAGCT CTCTGGGGAA GTTCATCAGG
GATTATGTCA AACGGCAAAA CCTTGGGATC GACCTGAAAA AAGAGGGGTA TAAAAACCTG
ATCATGCAGA CGATGGAGAT GCTGGAACAG GCCGACTATC TGAAATCATT TCCTGCCCGG
AGCGAGCAGA ATGAAGAGGT ACTCATCTAC CGTTTACGAC TCGAAAAGGT TATCTGGAAA
GCGGGGGAGG GGCTGACGGT CAAGGCAGAC ATTATCAAAC GACGCACCTA TAAAAAGCAG
AGACCCGAGC CCAATCTCTT TTTCAAAACG CTCTATTGTC GTGATTTCTC AACCATGAAA
CGGCTGCGAA GTGAAGACCA TACCGGACAG TTGAGTAATG AAGCACGGCT GGATCGTGAA
GAGCGATTCC GGGCCGATTG GTACACCGAT GAAGGCAAGC GGGTGGCTGA CCAGCAAAAG
ATAAGAGCCG AATCAATCAG CGTGCTTTTC TGCTCCCCGA CCATGGAACT TGGCGTTGAT
ATCGGTTCAC TCAATGTTGT CCACATGCGC AACGCTCCTC CAAACCCCTC CAACTATGCC
CAGCGTTCAG GCAGAGCAGG CCGGAGTGGT CAGGGAGCAC TTATCTTTAC CTACTGCTCA
AGTTATGCCC CCCATGATCG CCACTACTTT AACAATCAGC GCGAACTGGT TGCAGGTACG
GTCATGGCGC CGCGTCTCGA TCTGAATAAT GAGGAGCTGC TGCGTGCCCA TTTGCACGCT
CTGGTAGCCT CAGAGGTTGG CATTCCCGGC CTTGATGAGG GTAACGGCTC AAGACCCTCA
ATCATGCATC TTGTGACCGA TGACAATAAC AAGATGCCTC TTGCCGAGAG CGTTCGGGCC
GGGCTTCAGC TCTCTCCGGT ACAGTTTGAT CGGATAAAAG CCAATTTCAG AAGGGTAATC
CGCGATTTTG AACCGGAACT GGAAGCAAAA GCCGCATGGT ATTCCGATCA ATGGATTGAG
CAGAACCTTT CGAAGATTAT TGAAACCCTC GATGAAGCAC TCGATCGCTG GCGGCTCATC
TACCGTTCGG CAAGGGCAAT TCTGACCAGA GCTACCCAGA AGATCGAAAG CGGCACGCTG
AGCCTTGGCA GCGAAGAGTA TCGCAAATAC AAACGCCATC AGGATCAGGC CACCCGTCAA
CTGGACCTGC TTCGCAATCA TCTTTCCGGC AAGGCATCGG AACTCTCCGA GTTCTATCCC
TGGCGTTATC TTGCTTCCGA AGGGTTCCTG CCCGGCTACA ACTTTACACG ACTTCCTCTT
CGTGTCTTTT TACCCGACGG TGATTCTGCC GGGCTCTTTG TCTCCCGCCC CCGCTCTCTG
GCCCTCCGGG AGTTCGGGCC CCAGAATATC ATCTATCACA GCGGGCGGAA GTACCGGGTG
TGCCAGTTGA TTATGCAGGA TACCGAATCC TCTCTTACCG AGGCAAAAAT CAGCACCCGG
TCAGGATATT TCCTCCCCAT AGATCAGAAG GATCTTGAAA TCTGTCCTTT TTCAGGGTTG
AATCTTGGCG ACAATGCCAA CAAGCTGCAC ATTCATGATT TGCTGGAAAT GTCGGAATCC
CGCGCTGAAG AGGTGGATCG TATCTCCTGC GAAGAGGAGG AACGGCTCTC CAAAGGCTTT
GATATCCGAA CCTTCTTTAC CGTTGACGGC GGCCAGGTTG AGCGGGTACG TAAGGCCATC
GTCTCCAGCA GTGAAGGTAG CCTGCTGAAT GTGCGGTACA TCCCGGCAGC CCGGCTTGTC
CATATCAACT TCAAATGGAA GGCTCAGGAG ACGGAGGGGT TTCCCATCGG CATGGTCTCT
GGCGACTGGC GCAGCTCTCT TCCTGATCAG GAGGCCCAGA GCAGTGAGCA ATTCCGGCGA
GTGAAATTGA TGACCTCAAA CCTTGCCGAT GCCTTGTATA TCGAGCCGAT TCAACCGCTT
GGATTAACTC CCGACGGGGT GATTACGCTC CAGCACGCCC TGAAGAGAGC CATCGAACTT
ATCTTTCAAG TGGAACCACG AGAGATCGGT GTGGTAACAG TCGGCGACCC GGAAGCCCCC
AATATCCTGC TCTATGAAGC GGCGGAAGGG AGCCTTGGCA TCCTCTCCCA GTTTGTCGAA
AATGTTCACG CTTTCCATCA GGTGGTCAAG CAGGCCATAG AACTTTGCCG TTATGATGAT
CCTGAATACA AAGGACCAGC CTCATACAAT GACTTGCTCA GTTATTACAA CCAGCGTGAC
CACAAAGTCA TTGACCGTCA CCTCATCAAG GAGGCGCTTG AAAAGCTGAT GCTCTGCACC
ATCGAGATTC AGACCAACAA AAGTTATAAC AACTACGAAG AGCACTACCA GACGCTGCTC
GGCGGGATCG ATCCCAATTC GAGTACCGAG CGGAAGTTCC TTGATTTTCT CTATAAAAAC
GGCATTCGCC TGCCCGATGC CGCCCAGAAG AGGGTAGAGG GAATCTATGC GCAACCCGAT
TTCTATTATG AACCCCGCAT CTGGGTCTTT TGCGATGGAA CACCCCACGA CAATACTGAG
GTGCAGGAAA AAGATGAGGC ACTACGCCAG GCCATCATTG CCAAGGGTGA TGAGGTCTGG
ACATATTATT ACAGGGACAA TCTGGCCGAA AAGGTGGCCG GACGTCCTGA TATTTTCAGG
AAAGTAAAAT GA
|
|---|
| Protein sequence | MNVFKTHASI IEDYSSYIHS FISIADPDIS QVVDRALSTG KLWPEPLLQF NPSFEMFGGL
EKLIESKTLH GAIGDIFKGY KLYRHQVEAI RLGTSGKDFI VTSGTGSGKS LTYIGSIFHH
LLSNPATKGV TAVVVYPMNA LINSQFEEFT RYKKNYEDAT GKEFPIIFGQ YTGQEGEEAR
EKMRKNPPHI LLTNYMMLEL LLTRVRERNI RESIYLNLRF LVFDELHTYR GRQGADVSML
IRRIRSNCVQ QIVSIGTSAT MVSDSVGDIE HQKAEVANVA TKLFGCQFTT EQVINEKLAR
SLSPNGTIPA SHFLASAIES AINQDSDIEA LKKNPIAIWL ENKIALEERG TDLVRGKPKR
LREIASELAN DSGMAEERCR LYLVDLLLWI SVSNVRQQES GERYTFLPYK LHQFISQTGS
VYTTLDQDEK RDISLEPGVY KVDETDKKPI FPNVFSRGSG HPFICVSLAG NRLEPREFRD
MTEDEESNDG YLIIGEEIWN LDEDIEMLPE SWFRRTKSGV TLDSKKRGYF PVKLWFDEFG
NCSDKEEKKW WGWFMKAPLL FDPTSGGFFD TRTNEGTKLT KLGSEGRSTS TTITAFSILN
RLSDAGYAIK EQKLLSFTDN RQDAALQAGH FNDFVQVIRL RAGIHKALQQ APVGMLTFAT
LGEAVFKALG LPFLEYANRS EESMLAPIRR KYEQALQDFL LYRSMADLRR SWRVVLPNLE
QCALLTIEYE DLDEIIATDA FWAVSPLFGS LNHTDRKELV TTILDFFRLE YAIHSENFLT
QSRIQESERQ FRESLKQPWT LDRNEKLQEP YYIRYQKLSK TAKLYTKSMG PASSLGKFIR
DYVKRQNLGI DLKKEGYKNL IMQTMEMLEQ ADYLKSFPAR SEQNEEVLIY RLRLEKVIWK
AGEGLTVKAD IIKRRTYKKQ RPEPNLFFKT LYCRDFSTMK RLRSEDHTGQ LSNEARLDRE
ERFRADWYTD EGKRVADQQK IRAESISVLF CSPTMELGVD IGSLNVVHMR NAPPNPSNYA
QRSGRAGRSG QGALIFTYCS SYAPHDRHYF NNQRELVAGT VMAPRLDLNN EELLRAHLHA
LVASEVGIPG LDEGNGSRPS IMHLVTDDNN KMPLAESVRA GLQLSPVQFD RIKANFRRVI
RDFEPELEAK AAWYSDQWIE QNLSKIIETL DEALDRWRLI YRSARAILTR ATQKIESGTL
SLGSEEYRKY KRHQDQATRQ LDLLRNHLSG KASELSEFYP WRYLASEGFL PGYNFTRLPL
RVFLPDGDSA GLFVSRPRSL ALREFGPQNI IYHSGRKYRV CQLIMQDTES SLTEAKISTR
SGYFLPIDQK DLEICPFSGL NLGDNANKLH IHDLLEMSES RAEEVDRISC EEEERLSKGF
DIRTFFTVDG GQVERVRKAI VSSSEGSLLN VRYIPAARLV HINFKWKAQE TEGFPIGMVS
GDWRSSLPDQ EAQSSEQFRR VKLMTSNLAD ALYIEPIQPL GLTPDGVITL QHALKRAIEL
IFQVEPREIG VVTVGDPEAP NILLYEAAEG SLGILSQFVE NVHAFHQVVK QAIELCRYDD
PEYKGPASYN DLLSYYNQRD HKVIDRHLIK EALEKLMLCT IEIQTNKSYN NYEEHYQTLL
GGIDPNSSTE RKFLDFLYKN GIRLPDAAQK RVEGIYAQPD FYYEPRIWVF CDGTPHDNTE
VQEKDEALRQ AIIAKGDEVW TYYYRDNLAE KVAGRPDIFR KVK
|
|---|
| |