Gene Ppha_1390 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPpha_1390 
Symbol 
ID6463626 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePelodictyon phaeoclathratiforme BU-1 
KingdomBacteria 
Replicon accessionNC_011060 
Strand+ 
Start bp1453860 
End bp1454510 
Gene Length651 bp 
Protein Length216 aa 
Translation table11 
GC content48% 
IMG OID642727629 
Productprotein of unknown function UPF0016 
Protein accessionYP_002018270 
Protein GI194336476 
COG category[S] Function unknown 
COG ID[COG2119] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones8 
Plasmid unclonability p-value0.023314 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGACGCAT TCTGGCTTTC TCTTGTCATG ATTTTTCTGG CTGAACTTGG CGATAAAACC 
CAGCTTGTTG CCCTGACGCT GGCAACCTGT TACAATACCA GTGTTGTATT ATGGGGTATT 
TTCTGGGCAA CTCTTGCCAT TCACGTTTTT TCAGCCGGGA TCGGCTGGTT CATCGGCGAC 
AAGTTGCCAA CGGAATGGAT CAAGTTTGTT GCAGGTATTG CCTTCATTGC TTTCGGGTTC 
TGGACGCTTC GGGGTGATAG CCTTGATGAG GACGAGAAAA GCTGCAAAAC CGGTATTAAC 
CCCTTTTGGC TTGTATTCTC AACCTTCTTC ATGGCGGAAC TTGGCGACAA GACCATGCTC 
TCAACCATTA CCCTTGCTTC AACCAATCCA TTTTTTCCTG TCTGGATTGG TTCAACCATC 
GGCATGGTGC TTTCCGACGG GCTGGCAATT ATTGCAGGAA AAATGCTCGG CGCCCGGCTG 
CCTGAGAACA TCATCAAAAT CGGTGCGGCG GTCATCTTTT TCCTCTTTGG GATTTTTAGT 
ATGTACGAAG GCGGTTCGGG ATTTGCTCTT GCCATATGGG GAGTTGCAGG AGCGTTTATT 
GCACTCACGG GCTATATCTT TCTTCGAAAA CCTGCAAATA CGGCATCATA A
 
Protein sequence
MDAFWLSLVM IFLAELGDKT QLVALTLATC YNTSVVLWGI FWATLAIHVF SAGIGWFIGD 
KLPTEWIKFV AGIAFIAFGF WTLRGDSLDE DEKSCKTGIN PFWLVFSTFF MAELGDKTML 
STITLASTNP FFPVWIGSTI GMVLSDGLAI IAGKMLGARL PENIIKIGAA VIFFLFGIFS 
MYEGGSGFAL AIWGVAGAFI ALTGYIFLRK PANTAS