| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1195 |
|---|
| Symbol | |
|---|
| ID | 6462539 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | + |
|---|
| Start bp | 1245765 |
|---|
| End bp | 1246742 |
|---|
| Gene Length | 978 bp |
|---|
| Protein Length | 325 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 642727443 |
|---|
| Product | PSP1 domain protein |
|---|
| Protein accession | YP_002018085 |
|---|
| Protein GI | 194336291 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1774] Uncharacterized homolog of PSP1 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0954849 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAATG TCATATGTAG TTGTCTTTTA GGTGATAATA CCAATGTAAG GCTGCGGCTT
TCACAATTGC TGCACAGTGA GATGGAATCT ATTTATGGGC CAGTTTCTGA TGATGCTTCC
GACGATATAT GTGAAGTTGA GTTGCAGGGT TGCAGAAGGG AGTTTTTCAT CAACAACACA
GGAGTTCCTT TCAGTATCGG GTTGCAGGTC ATTATCGAAT CAGACGGTGG TTATGATTTT
GGTATTGTTT ATTCAACTGG TCAGATAGCG CGCAAAAAGC TTCAGCTCAA AGGGCTGGAT
AAGAATGGCC AGGAGTGGAC TGCAGTGTTG CGGATTGCTG ACGAGAGTGA CAAACTGGCA
ATTCTTGATT TGAAAAAACG GCAATCGGAG ATACGGGAGG TCTGTCTCAA CAAAATTAAA
AAGCACGAAC TTGATCTGAA ACTGGTTGAT GTTGAATTGC GTATGGATCA ACAGAAACTG
TCGGTCTACT ATACCTCTTC ACATCGGGTT GATTTCAGGA CACTTGTTCG TGATCTTGCC
GGAGAGTTCA AGGCAAGAAT CCAGATGGTG CAGATAACCA CACGAGAGGA AGCAAGGAGA
GCGAATGCTT TTGGGCCATG CGGTTGCCTT CTCTGTTGCT CGAGCTGGCT GCCTAAAATC
CATGCCAACC CCTTTGCTGA AAAGTCGCAA TACACCGAAG CAGCAGGCAA CGAGAGCCAT
GCTTTCAATA TTACCGGATT ATGTAATCGT CCCAAATGCT GTCTTGGGTA TTCAAAACAT
GAAAAAGGCT GCCGCTCTCA GTCGAACGGC AACTCATCGC TCCCCCTTGC AGGAAGCAAG
GTCATCACGC CTGAGGGTCC GGCTGTTGTA GAAAGTGTTG ATGCTCAGAA AAAACTTGTC
TGGCTTCGCT ATCTCAAGAA CGATCAGACA CGCAGATTCC CTATTAACAA GTTCAACGCC
CTGTTTGTAA AAAAATAA
|
|---|
| Protein sequence | MSNVICSCLL GDNTNVRLRL SQLLHSEMES IYGPVSDDAS DDICEVELQG CRREFFINNT
GVPFSIGLQV IIESDGGYDF GIVYSTGQIA RKKLQLKGLD KNGQEWTAVL RIADESDKLA
ILDLKKRQSE IREVCLNKIK KHELDLKLVD VELRMDQQKL SVYYTSSHRV DFRTLVRDLA
GEFKARIQMV QITTREEARR ANAFGPCGCL LCCSSWLPKI HANPFAEKSQ YTEAAGNESH
AFNITGLCNR PKCCLGYSKH EKGCRSQSNG NSSLPLAGSK VITPEGPAVV ESVDAQKKLV
WLRYLKNDQT RRFPINKFNA LFVKK
|
|---|
| |