| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1168 |
|---|
| Symbol | |
|---|
| ID | 6463477 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | - |
|---|
| Start bp | 1220678 |
|---|
| End bp | 1222453 |
|---|
| Gene Length | 1776 bp |
|---|
| Protein Length | 591 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 642727416 |
|---|
| Product | Methylmalonyl-CoA mutase |
|---|
| Protein accession | YP_002018060 |
|---|
| Protein GI | 194336266 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1884] Methylmalonyl-CoA mutase, N-terminal domain/subunit |
|---|
| TIGRFAM ID | [TIGR00641] methylmalonyl-CoA mutase N-terminal domain
[TIGR00642] methylmalonyl-CoA mutase, heterodimeric type, beta chain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.648096 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACACACT CCCGGCCTGA TTCTCTTTTT TCCAGCTTCC CGCCTGTCAG TCGGGCTGAA
TGGAAAACCA AGGCAGTTGC CGACCTCAAA GGAAAACCTT ATGAAACCAT AGTCTGGCAT
ACGCCAGAGG GTTTTGATCT TGAACCCTGG CACGCTCATG AAGAGAAAGA ACAACACCTT
GAGCTGCCAC CCTCAAAAGG AAACAATACC TGGAAAAATT GCCACCGTAT TACCGTGCAT
GAAGCGGAAA GTGCAAACAA AGCCGCATTA AAAACGTTTG AACTTGATGC TTCGGCAATC
GAGTTCGCAG TAACGGATCC TGCGCTCTGT TCCCCGGAAC AGCTCAATCG ACTCTTTGCG
GGAATCAACA CCTCGGCGGT TGCCATCCAC TTTTCAGGGA ACCTCCCTCC TGCTCACGAA
CTGCTTGCAG CGCTTGCGAC GCTTCCCGGA TTTACGGAAA ACAGGGGGGG GCTGCTCACC
TCTTCAGCAG ATCAGCCCTT TTACGAACCC GAAAAGTTCC ATTCCCACTT CAGGGCACTT
CCCCGCTTCA GATTTCTGGC TGTTGATACC ATCCCTTTTC ATGAAAAAGG CTCCACATCA
ACACAGGAGA TTGCATTTGC GCTCGCCATA GCAAGCGACT ATCTCCACAG CTTTACTGAA
TCCGGAGTTC CGGTGGAGAG CATCATTGCA GCGATGGAAA TCATCCTTCC TGTCGGATCG
AGCCACTTTA CCGAACTGGC GAAACCCAGA GCCCTGCGTT ACCTCCTTCA GCATCTTCTG
AAGGCCTACG GTGCATCAGG ATCAGCACAG CCAACTCTCT TTGCCAGAAC ATCAGACAGA
AACCACTCTC TGCTCGATCC CTACACCAAT GTGCTCCGAC TGACCACCGA ATCAGTTTCA
GCAATTCTCG GCGGTTACGA CACCCTGCAG ATAGGTGCAT TCGACACAGG CCTCTCTGTC
AAAGCTGAAA TTACAGAACG AATCACGGGC AATATTCACC TGATTCTCAA GGAAGAGGCC
TCATTTGACC GGGTTGTCGA CGCGGCACAT GGTTCGCACT ACATTGAAGC CATGACCAGA
GAGCTTGCCG AATCGGCATG GACTCTCTTT AAAGAGATTG AAGCGGCAGG AGGTATGGCT
GAAGCTACCG ATCGCGGTGT CATTGAAACC ATGATTGCCG AAGCGACCGA CAAACGACGG
AGAGTTCTCG AAAACCGAAA AAAAACCTTG ATTGGCATCA ACCGTTATCC CTGGCCTCTC
ACGGACGAAC AGGTAGAACA TATCGACGCA CTTGAGCTTG CTCTGGAACA ACTCCCTGAA
GGTAATGAAA CCGCTGGTTA TGAGCTGGTA CGTCTGAAAA GCCGTTCCTT CAGCCTGAAG
TCCGGTCGTA CACCATCCGT ATTTATCTGG ATGCTGGGCA ACCCGGCCAT AAGTTTCCAG
CAAGCTGCCT TTGCCGAAGA CTTTTTCAAA TGTGGCGGTT TTGAGATTGC CGGACGCGCA
ACACTCCCTC TTGAAGAGAG GGCATACAGC ACAGCCCTGC AGAATAAACC GGACATTATG
GTCTTCTGTA TAGCCGAAAA AGATCCTGTT CCAACAGCGG AAACACTCTG CAAGAGACTT
CATACTCTCG ATGGCGACAT TATTACTGTC ATGGCAGGAA AGCCACCCGA AGAAAAGGAA
CGCCTCTTCG CCGCAGGCCT CGACAGCTTC ATCTATGCAG GCGTCAATGT TCTTGAAATG
CTGAAATCCT ACCAACGTAA AACCGGAGTG CAATGA
|
|---|
| Protein sequence | MTHSRPDSLF SSFPPVSRAE WKTKAVADLK GKPYETIVWH TPEGFDLEPW HAHEEKEQHL
ELPPSKGNNT WKNCHRITVH EAESANKAAL KTFELDASAI EFAVTDPALC SPEQLNRLFA
GINTSAVAIH FSGNLPPAHE LLAALATLPG FTENRGGLLT SSADQPFYEP EKFHSHFRAL
PRFRFLAVDT IPFHEKGSTS TQEIAFALAI ASDYLHSFTE SGVPVESIIA AMEIILPVGS
SHFTELAKPR ALRYLLQHLL KAYGASGSAQ PTLFARTSDR NHSLLDPYTN VLRLTTESVS
AILGGYDTLQ IGAFDTGLSV KAEITERITG NIHLILKEEA SFDRVVDAAH GSHYIEAMTR
ELAESAWTLF KEIEAAGGMA EATDRGVIET MIAEATDKRR RVLENRKKTL IGINRYPWPL
TDEQVEHIDA LELALEQLPE GNETAGYELV RLKSRSFSLK SGRTPSVFIW MLGNPAISFQ
QAAFAEDFFK CGGFEIAGRA TLPLEERAYS TALQNKPDIM VFCIAEKDPV PTAETLCKRL
HTLDGDIITV MAGKPPEEKE RLFAAGLDSF IYAGVNVLEM LKSYQRKTGV Q
|
|---|
| |