| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1121 |
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| Symbol | |
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| ID | 6462683 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | + |
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| Start bp | 1155112 |
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| End bp | 1157094 |
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| Gene Length | 1983 bp |
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| Protein Length | 660 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 642727367 |
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| Product | Tetratricopeptide TPR_2 repeat protein |
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| Protein accession | YP_002018017 |
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| Protein GI | 194336223 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCACATTA TCCATCCGAT AAACGATTTT TTGTTTGAAC TTTTCCCCAA GGCAAAAGAG
GCGGGAAACA ATATTGATGT ACTGAAGCAG GAGATTGAGA CCTTTTATAC GGTAGGGCCT
TTCAAGCCAG CGATTACCAT CGTGCACGGC ATCATCGATA TCACGATTGA GGGTGACCTG
ATTGCACAGC ACAACAGCCG CTATAACAAA GTCCTTGCAC TCTGTGATGT CCGCCAATAT
ACCGAGGCCA AAGAGCAGAT CAGTCAGCTC ATCAAGGAAG CTCCTCATAT TTCAGAGTAC
CACCGGGTAC TTGGCCAAAT CCTTTCAGAG CAGGGCGAAC AGGATGATGC CATCAACAGC
CTTATCGATG CACTGCGCTG GGACCCGAAA AATGGGTGGG CGCTTATTAT TACGGGCAAC
ATTATGGCCC GCTATCAGCA CGACCTTGAG ACGGCTATGA AATACTATGA GTGCGCTCTG
CAGCATAAAC CCGACGATTA TGTTTCCATG ACGCTGATTG CCATCAACCT GATCCAGAAC
GGGAATCCGG ATGCAGCACG GCAATACCTC GACAGGGCTT TTGCGGTTAA TCCCGCTTAT
CCGAATATCT ATTATGCCTT TGCCCTCCTT GCAGAGGCTG AACATCATTC CAGGGAAGCG
TTTGAGATGT CGATTGTTGC GCTTTTCAAG AATCCCAAAA AGGATCTGCT CTATCAGCAA
TCGCTGAAGA GCGCCATGAA GGCGGCAAGT GAGATTATTG ACGAAGAGGT CGGTGGTGAT
CTTGTCAATG CCTATGCCTC GACGCTGGAG GAGGAGTGCG GCAAGAAAAT CGTTATCGAA
ACGGATACCG GGTTAAAGAG CGCAGCCAAA ATCGAGTGTG CCGAAAACCA CGACCGGAGC
TACCACCTCG TCAAATACAA TCCAGACTAC CCGGCGGTTC ACCATCTGAT CATGCATGAG
CTCGCGCATC TGCATTTTGC GGCTCAGGCA CGACAGACAG GGAAAAACAA GCTCTTTGTC
AGCAATGATG AGAACAAAAA GCGATTCCTG GGTTCCCATG AAAAAGATGC CAGGATGTTG
AGCAAAAAAG GTTACGACGA TGCGCTCATC GAGAACTATT ATGCCTTGTT TCAGGTGCTG
AACGCCCAGA TCTTCAACAC GCCGATTGAT CTTTATATCG AGGATTATCT GTTTCAGAAC
TATCCGGCTC TCATGCCCTA TCAGTTTCTT TCGCTGCTTG GCCTTATACA GGAAGGAATT
TACGCAACGA CCGATGAACA GATTCTGACC ATTGCACCAC CGGAAATCCT CTCGAAATCA
AAGATATTTA ATCTGGTCAA GGCACTGCAC TTTCAAAAGC GGTATGGGGT GAACCTTATA
GAAGAGCACA AGCCAACCAC CGCAGAAAAA GAGCAGGCTG TAACCTTCTA CCGCGAATAT
GAGGAGTGCC GAACCCGGCA CACGCCCGGC GATGAATATG AACTGCTTCA GCGGTGGGCA
AAGCAGTTAT ATCTGCAGAA CTTTTTCGCA CTCATTGAAG AGCCCGATTA CCGGGAGCAA
AGCGACCTTA TCGAGCGCCT TTGCGCTGAA GTGCAGGTCG ATTTGCCCGG CAAAGGTGAT
GCCGCCCATC CGGCAGACCA GAAGAGGCAG CTCTGCACCG AGGCGCATCA GGGCAAAGAT
ATTAATATGG CCGTAACCCG GTTCATGGTC GAAGCACTGC ATTACTTCAA AAATCTGACC
GACTCGGAGA TCACTGCCAT TGCCATCCAA ATAGGCCTGA TGTGTGGGGA GGGAATAAAC
CCGGATGCAG AAGGCTACAC CATCCCGCTC ATAGCCGCCA GAACCTTCAC CGGATACCAG
GTGCTGGCCT ACTATTACGT GAGCTGGGCA AAGGCATTCC CTGAGTACCT GCAGCAACTC
CAGCTCCCGT TTGACAAAGA GTACGAATTT GCTCTTGAAA TGTTGGGGAT GGGAGGGGGA
TGA
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| Protein sequence | MHIIHPINDF LFELFPKAKE AGNNIDVLKQ EIETFYTVGP FKPAITIVHG IIDITIEGDL
IAQHNSRYNK VLALCDVRQY TEAKEQISQL IKEAPHISEY HRVLGQILSE QGEQDDAINS
LIDALRWDPK NGWALIITGN IMARYQHDLE TAMKYYECAL QHKPDDYVSM TLIAINLIQN
GNPDAARQYL DRAFAVNPAY PNIYYAFALL AEAEHHSREA FEMSIVALFK NPKKDLLYQQ
SLKSAMKAAS EIIDEEVGGD LVNAYASTLE EECGKKIVIE TDTGLKSAAK IECAENHDRS
YHLVKYNPDY PAVHHLIMHE LAHLHFAAQA RQTGKNKLFV SNDENKKRFL GSHEKDARML
SKKGYDDALI ENYYALFQVL NAQIFNTPID LYIEDYLFQN YPALMPYQFL SLLGLIQEGI
YATTDEQILT IAPPEILSKS KIFNLVKALH FQKRYGVNLI EEHKPTTAEK EQAVTFYREY
EECRTRHTPG DEYELLQRWA KQLYLQNFFA LIEEPDYREQ SDLIERLCAE VQVDLPGKGD
AAHPADQKRQ LCTEAHQGKD INMAVTRFMV EALHYFKNLT DSEITAIAIQ IGLMCGEGIN
PDAEGYTIPL IAARTFTGYQ VLAYYYVSWA KAFPEYLQQL QLPFDKEYEF ALEMLGMGGG
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