| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1117 |
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| Symbol | |
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| ID | 6462804 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | + |
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| Start bp | 1148140 |
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| End bp | 1149270 |
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| Gene Length | 1131 bp |
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| Protein Length | 376 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 642727363 |
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| Product | efflux transporter, RND family, MFP subunit |
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| Protein accession | YP_002018013 |
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| Protein GI | 194336219 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0140148 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAGAT TTTTTCGTAT TCCGGTTTTG ATCGGCATGT GCGTACCGCT GTTTTTTTCC
GGTTGTGGAT CGGGAGGAGG TGGTAAAGAT CCCATGAAGC AGGGAACTCC GGCCTTACCG
GTTATGACGC TCAGCACCTC TGACGCGAGT GTGAAAGAGG AGTATTCAGC TCTTCTTGAA
GGAAAGGTCA ATGTTGAAAT TCGTCCGCAA CTCGATGGTA CGCTTCAGAA AATATATGTT
GATGAAGGGG CATCTGTAAA AGCAGGGCAG CCTCTTTTTA AAATTGATGA CCGGGTTTAC
CGCGAGCAGT ATAACAGTGC GTTTGCAGCT CAACATGCCG CTGAAGCTGG GCTGGCTGTT
GCAAAGCTTG AGGTCGAAAA ACTGCTGCCG CTGGTTCAGA ACAAGGTGAT CTCGGATATT
CAGCTTAAAA TTGCGCGGGC AAACTATCAG GCCTCACTTG CTGCTGTTGA GCAGACGAGA
GCCAGCGCCC GTTCTGCAGC CGTTAATCTT GGTTATACGG TTATCAAGGC TCCGGTAAGT
GGTTATATCG GTAAAATCCC TTTCAGGATT GGCAGTCTGC TCAGTCAAAA CCAGAGTGAG
TGGTTGACGC TTCTGAGCGA CGTCAGTGAG ATCTATGCTT CGTTCAGTAT GAGCGAAATT
GCTTTTATGC GTTTTCGTCA ATACTATCCC GGAGTGACAT TACAGGAAAA AGTTCGGCAA
GTTTCACCGG TTTCGCTGAT TATGGCAGAT GGCAGCACGT TTTCGGAAAA AGGAGCCATC
AGTACTATAA GCGGCCAGTT TGATCAGGCA ACAGGCTCCG TCAGGATAAG GGCGGTTTTT
CGCAATCCGG AAGGGGTGCT TCGGTCAGGC AATACCGGCA AGGTGGTCAT CGAATCGCTT
TCACGTAATG TGCTGCTGGT TCCGCAGGCT GCTACCGTTG AGCTGCAGGA CAAAGTCTTT
GTTTTTCAGC TTGCAAAGGA TAACAAGGTG ACGAAGCGGG TGATTGTTGT TTCGGCAAAG
AGTGGCAACA ATTATATCGT GAGTTCAGGC GTGAAACAGG GGGATGTTAT TGTTACAGCC
GGAATTGAAA AATTACAGGA TGGGGCACTC ATCAAGCCAA TCAAGAAGTG A
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| Protein sequence | MKRFFRIPVL IGMCVPLFFS GCGSGGGGKD PMKQGTPALP VMTLSTSDAS VKEEYSALLE
GKVNVEIRPQ LDGTLQKIYV DEGASVKAGQ PLFKIDDRVY REQYNSAFAA QHAAEAGLAV
AKLEVEKLLP LVQNKVISDI QLKIARANYQ ASLAAVEQTR ASARSAAVNL GYTVIKAPVS
GYIGKIPFRI GSLLSQNQSE WLTLLSDVSE IYASFSMSEI AFMRFRQYYP GVTLQEKVRQ
VSPVSLIMAD GSTFSEKGAI STISGQFDQA TGSVRIRAVF RNPEGVLRSG NTGKVVIESL
SRNVLLVPQA ATVELQDKVF VFQLAKDNKV TKRVIVVSAK SGNNYIVSSG VKQGDVIVTA
GIEKLQDGAL IKPIKK
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