| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1107 |
|---|
| Symbol | |
|---|
| ID | 6462840 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | + |
|---|
| Start bp | 1138538 |
|---|
| End bp | 1139773 |
|---|
| Gene Length | 1236 bp |
|---|
| Protein Length | 411 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 642727353 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002018003 |
|---|
| Protein GI | 194336209 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000117333 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAC AATTATTGCC ACTGCTTGTT GCTGTCTGCG CAGCCACCGG AACAACATCT
CTTGAAGCAA AAACTATAGC CGGTTCAGAC AATGCTGAGG TCAGGGGAGT GCAGGCGCTC
TCGCTGAGGA AGGCCATGGA GGGTTATGCA CGGCAGTACG ACAATCTCAG GTTGGTTGAA
CAAAAATGCC CTCGTGATTA CAGGCTTGTT CAGCTCTGTT TGCTGCTCGA TACCAGCAAC
AGTATGGACG GACTGATCAA TCAGGCAAAG AGCCAGTTAT GGCAGATCGT CAACGAACTT
TCAAGAATGC ATAAACGGGG CGAAAACATT CGGCTTGAGG TCGCGCTCTA TGAATATGGC
AACAACAACC TTCCGGCAAC GTCGGGATAT ATCCGTCAGG TGACTCCGTT TACGGAAAAC
CTCGACCTGC TTTCCGAAGC GCTTTTCTCT CTCGACACCA ACGGCGGTTC GGAGTATTGC
GGGCATGTTA TCGGCAGCAG CCTGAACCAG TTGCAGTGGA ATAGTTCCCG GGAAGGTCTG
AAAATGATTT TCATTGCGGG TAATGAACCG TTCAACCAGG GATCGATTGA TTACGATGTG
GCTTGCCGGT GGGCTGCCGG AAAGGATATC GTGGTCAACA CCATCTACTG TGGGGACTAC
CGTGAAGGTA TCGGATCATT CTGGCAGAGA GGGGCCGTTT TGGGTGGTGG CAGCTACTTT
GCCATCGACA GCGACAGGGA TGCAGGAGGT ATTCCGACAC CTTATGATCA TGATCTGGTA
CTGTTGAACA GCCGGATCAA CAGCACCTAT GTACCCTATG GCAAGGCTGG AAAAGAGAGC
ATTGCCCGCC AGTCGCAGCA GGACGCGAAC GCTGCAAAAC TTTCCGCACC CGTTTCGGCA
GCAAGGAGTG TCTCAAAAGG ATCGAGTCTT TACAAGGCTT CGGAGTGGGA TCTGGTCGAT
GCAGTGGAAG AGAAAAAAAT AACAACCGGT CAGCTCAAGA AGGAAGAACT GCCGGAAGAG
CTGCGGAAGA TGAACACCGG TCAACTGAAC GGCTATGTTC AGCAAAAAAA GAGAGAGCGG
GAAGAGGTGA AAGCGCAGAT TACAGAACTG AGCCGGAAAC GGGATGCCTA TATCCTGCAG
AAACAGAAAC AAAATGCTGG TGAACAGAGC CTCGGCTCAG TCATTCTCAA AAATCTGAGG
GCCCAGGCCG AAGCCAAAAA CTTCAGGTTC AAGTAA
|
|---|
| Protein sequence | MKKQLLPLLV AVCAATGTTS LEAKTIAGSD NAEVRGVQAL SLRKAMEGYA RQYDNLRLVE
QKCPRDYRLV QLCLLLDTSN SMDGLINQAK SQLWQIVNEL SRMHKRGENI RLEVALYEYG
NNNLPATSGY IRQVTPFTEN LDLLSEALFS LDTNGGSEYC GHVIGSSLNQ LQWNSSREGL
KMIFIAGNEP FNQGSIDYDV ACRWAAGKDI VVNTIYCGDY REGIGSFWQR GAVLGGGSYF
AIDSDRDAGG IPTPYDHDLV LLNSRINSTY VPYGKAGKES IARQSQQDAN AAKLSAPVSA
ARSVSKGSSL YKASEWDLVD AVEEKKITTG QLKKEELPEE LRKMNTGQLN GYVQQKKRER
EEVKAQITEL SRKRDAYILQ KQKQNAGEQS LGSVILKNLR AQAEAKNFRF K
|
|---|
| |